Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49960 183 / 4e-54 Xanthine/uracil permease family protein (.1) AT1G60030 164 / 7e-47 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 152 / 4e-43 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 152 / 2e-42 Xanthine/uracil permease family protein (.1) AT2G34190 144 / 2e-39 Xanthine/uracil permease family protein (.1) AT5G25420 142 / 2e-39 Xanthine/uracil/vitamin C permease (.1) AT1G10540 142 / 8e-39 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G65550 142 / 9e-39 Xanthine/uracil permease family protein (.1) AT2G05760 140 / 2e-38 Xanthine/uracil permease family protein (.1) AT2G26510 104 / 1e-25 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033773 [exp] 280 / 2e-91 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 164 / 4e-47 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 164 / 1e-46 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 160 / 4e-45 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029191 [exp] 155 / 9e-44 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 155 / 1e-43 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10007289 [exp] 146 / 1e-41 AT2G34190 512 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 145 / 5e-40 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 144 / 2e-39 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G086800 [exp] 200 / 9e-61 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.015G072600 [exp] 160 / 1e-45 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 160 / 2e-45 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.010G095500 [exp] 157 / 3e-44 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.008G146400 [exp] 157 / 3e-44 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.011G068200 [exp] 153 / 7e-43 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 150 / 5e-42 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 149 / 1e-41 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 128 / 5e-34 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 125 / 1e-32 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10006134 pacid=23176726 polypeptide=Lus10006134 locus=Lus10006134.g ID=Lus10006134.BGIv1.0 annot-version=v1.0 ATGGTAGCAGCAGGCAGTTGCGCAACTTCACATGCTTCCACCAACGACGACGACGACTTCAAGCCTTTCCCGGCGTCGAGTATTGCGTCAACAGCAATCC TTGCTGGTCTCGTAACTACAGGGAGTCCGTTGTCCTGGTTCTCGTCCGCTTGCTTATTTATTTCTGATTTACCTATCGGCAACCAGAATTTTGATTTGAT TCGAGACATCTTCGAAGCTGAAGCAATAATTTTAGGCTTTCAGCAGTACCTGGTGATGCTCGGCACTACTGTCACCATCCCAACCATACTTGTTCCTCTG ATGGGCGGTGGTAATGTGGAGAAGGCTGAGATGATCAATTCATTGCTCTTTGTCTCGGCAATAAGCACTTTGTTACAAACTTGGTTTGGCACTCGGCTTC CAGTCGTGATGGGAGGATCTTATGCTTTCGTTATCCCTGCAATCTCCATTGCTTTATCGATTAACAGTAGCAAGAGCAGCGCAAATTTGAGTGACCATGT TCGGTTTAAGAAATCGCTGGCAGCGATACTGGGAGCGATTACCATTGTATCTTTACTTCAAGTGGTGATTGGTTACTTTGGTCTGGCAAGGGTTTGTTCA AGATTCCTAAGCCCTCTTGCTGCCGCACCTCTTGTGATACTCACTGGTCTTGGCCTCTTTGTACATGGATTTCCGCAGGCGGCCAAATGTGCTGAAGTTG CACTCCCAGCACTACTTTTTCTCGTTTTCTTGTCTCAAGTGGGGCGGCTGACCATATCTCTTGCAGTACCTTCCTCATATGTTGAACTCAAGAAGAACCA TATCAGATAG
AA sequence Show only first row Show all	>Lus10006134 pacid=23176726 polypeptide=Lus10006134 locus=Lus10006134.g ID=Lus10006134.BGIv1.0 annot-version=v1.0 MVAAGSCATSHASTNDDDDFKPFPASSIASTAILAGLVTTGSPLSWFSSACLFISDLPIGNQNFDLIRDIFEAEAIILGFQQYLVMLGTTVTIPTILVPL MGGGNVEKAEMINSLLFVSAISTLLQTWFGTRLPVVMGGSYAFVIPAISIALSINSSKSSANLSDHVRFKKSLAAILGAITIVSLLQVVIGYFGLARVCS RFLSPLAAAPLVILTGLGLFVHGFPQAAKCAEVALPALLFLVFLSQVGRLTISLAVPSSYVELKKNHIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49960			Xanthine/uracil permease famil...		Lus10006134 [exp]	0	1
					Lus10013619 [exp]	2.4	0.8686
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	4.2	0.8163
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009029 [exp]	6.9	0.8612
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021391 [exp]	8.5	0.8086
AT5G14230			unknown protein		Lus10036990 [exp]	12.7	0.8533
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10000737 [exp]	13.9	0.7982
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	15.3	0.8114
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	21.5	0.8201
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	23.8	0.7764
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	23.9	0.7713

Compare expression of checked genes

Lus10006134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.