Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 535 / 0 LAC14 laccase 14 (.1) AT5G48100 533 / 0 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G05390 499 / 7e-172 LAC12 laccase 12 (.1) AT2G30210 470 / 2e-160 LAC3 laccase 3 (.1) AT2G40370 468 / 2e-159 LAC5 laccase 5 (.1) AT2G38080 463 / 7e-158 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT2G29130 452 / 2e-153 LAC2, ATLAC2 laccase 2 (.1) AT5G03260 443 / 4e-150 LAC11 laccase 11 (.1) AT5G60020 443 / 1e-149 LAC17, ATLAC17 laccase 17 (.1) AT5G07130 442 / 2e-149 LAC13 laccase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041067 [exp] 965 / 0 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10041066 [exp] 538 / 0 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10027782 [exp] 488 / 4e-168 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10035517 [exp] 487 / 4e-167 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10026512 [exp] 472 / 4e-161 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10017427 [exp] 471 / 2e-160 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10026812 [exp] 469 / 2e-160 AT5G09360 540 / 0.0 laccase 14 (.1) Lus10017175 [exp] 468 / 3e-160 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10019122 [exp] 465 / 2e-158 AT5G60020 938 / 0.0 laccase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200600 [exp] 672 / 0 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200500 [exp] 671 / 0 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 661 / 0 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200700 [exp] 575 / 0 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 554 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 528 / 0 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 528 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088600 [exp] 527 / 0 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 524 / 0 AT5G09360 592 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 522 / 0 AT5G09360 599 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10006157 pacid=23148550 polypeptide=Lus10006157 locus=Lus10006157.g ID=Lus10006157.BGIv1.0 annot-version=v1.0 ATGGAGCCGTCAAATTCAAAACTCGCCATAGCCGTTCCTTCGAGACGGCCTTCCAGGCGGCTCTTGTTCGATCGTCGCTATGGATGGGTGGTGGATGAAT GGAAGCACCCATCAGAGGAAGCTTTGGCCGGCGGCCGTGGAATGTTCTGCATAGTGCCCCTAGCAAAAGCATTCTGGAATATGGCTTCCAAGTCGGTGAA AGAAGCACCATACACAAGACTCTGTAGCACTAAGAACATCATGACCATCAATGGAAAATTCCCAGGAGAAACTCTGTACGTTAACAAAGGAGACACCCTC GTCGTCAACGTTGTCAACAATAGCCCACATAACATCACCATCCACTGGCATGGAGTGAATCAACCAAGGAACCCATGGTCAGACGGGCCGGAATACATCA CACAGTGTCCGATTCAGCCAGGCAGTAAATTCAGTCAGAAGATTATCTTGACGACGGAAGAAGGAACCCTATGGTGGCATGCTCATAGTGATTGGACTCG AGCTACTGTCTACGGTGCCATTGTTGTGTACCCTAAGAAAGGAGATACAGTTCCCTACCCTAAGCCTGAAGCTGACGTGCCTATTATCTTTGGAGAATGG TGGAAGCAAGATATATTCCAACTCTTTGAGAACACCCTTCGAACGGGAGGAGACCCCAATGTGTCTGATGCAATTACTATCAACGGTCAACCTGGCGATC AATTTAATTGCTCTACTCAAGTTAGGGTTTCAATCTGGATGGCTTCAATTCGTTGGAATTGTGAAAATTTTGACTCTTTCATGAGCTTTCGTTTGAGTTG TTTCTATAACTACATCACCATCTCCCCTGGCCAGACCATCGACGTCTTACTTAAAGCCAACCAACCCAGCAACAAAAAAAACTACTACATGGCCGCCAAA TTCTACTCAAGTGCACGCGCCGCCGTGAACCTCAACACCTCCACTGCCATGCTCCAATACTCCACCTCAGCCACCACCGCCACCTCAAACCTCCCATCCC TCCCGGCTAGGAACGACACCAACGCCTCGGTCAACTTCACCGGCAGCTTTCGAAGCTTGGCCGACAAGAAACACCCCATCGACGTCCCCAAGAAAGTAGA CACTAACTTATACTTCACGGTATCCATGAACGTGCTCCCTTGCCCTCCCGGATCAAACTGTACCAGGCTTAGCGGGGACCGGCTGGCTTCGAGCATCAAC AACATTAGCTTCGTGGCCAACACTTCCCTGGACGTACTCAGCGCGTACTACAACAAGATCAGCGGCGTTTATGGGGATGACTTCCCGAGCAAGCCTCCGG TGATGTTTAACTTTACGAATGCGACTATTCCGGCAGTTTACAGGACGCCTACGACGGGGAATGAGGTGAAGGTACTTGAGTACAACTCGTCGGTGGAACT TGTGTTCCAAGGAACGAATTTGCTTGGTGGAGTTGACCACCCCATGCATCTTCATGGGACCAACTTCTACGTAGTGGGGTGGGGGTTTGGTAACTTCGAC AAGGAGAGTGATCCCAAGTGTTATAATCTTGTTGATCCTCCGTTTCAGAACACCATCGCTGTTCCTAGAAACGGGTGGGTTGCCGTCAGATTCAGAGCCA CCAATCCTGGGGTTTGGTTCATGCACTGTCATTTGGAGCGACATGCGTCGTGGGGAATGGATATGACTTTCATTGTGAAGAATGGCAAAGGGCCTAACGC TAAAATGCTGCCGCCGCCGCCAGACATGCCCCGCTGCTGA
AA sequence Show only first row Show all	>Lus10006157 pacid=23148550 polypeptide=Lus10006157 locus=Lus10006157.g ID=Lus10006157.BGIv1.0 annot-version=v1.0 MEPSNSKLAIAVPSRRPSRRLLFDRRYGWVVDEWKHPSEEALAGGRGMFCIVPLAKAFWNMASKSVKEAPYTRLCSTKNIMTINGKFPGETLYVNKGDTL VVNVVNNSPHNITIHWHGVNQPRNPWSDGPEYITQCPIQPGSKFSQKIILTTEEGTLWWHAHSDWTRATVYGAIVVYPKKGDTVPYPKPEADVPIIFGEW WKQDIFQLFENTLRTGGDPNVSDAITINGQPGDQFNCSTQVRVSIWMASIRWNCENFDSFMSFRLSCFYNYITISPGQTIDVLLKANQPSNKKNYYMAAK FYSSARAAVNLNTSTAMLQYSTSATTATSNLPSLPARNDTNASVNFTGSFRSLADKKHPIDVPKKVDTNLYFTVSMNVLPCPPGSNCTRLSGDRLASSIN NISFVANTSLDVLSAYYNKISGVYGDDFPSKPPVMFNFTNATIPAVYRTPTTGNEVKVLEYNSSVELVFQGTNLLGGVDHPMHLHGTNFYVVGWGFGNFD KESDPKCYNLVDPPFQNTIAVPRNGWVAVRFRATNPGVWFMHCHLERHASWGMDMTFIVKNGKGPNAKMLPPPPDMPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09360		LAC14	laccase 14 (.1)		Lus10006157 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	2.4	0.9910
AT1G17860			Kunitz family trypsin and prot...		Lus10022302 [exp]	2.8	0.9892
AT4G37390		AUR3, YDK1, GH3...	YADOKARI 1, AUXIN UPREGULATED ...		Lus10010391 [exp]	3.7	0.9802
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001103 [exp]	4.0	0.9864
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	4.2	0.9876
AT1G17860			Kunitz family trypsin and prot...		Lus10007892 [exp]	5.0	0.9872
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	5.7	0.9874
AT1G17860			Kunitz family trypsin and prot...		Lus10039210 [exp]	6.0	0.9869
AT1G17860			Kunitz family trypsin and prot...		Lus10013731 [exp]	6.7	0.9853
AT1G17860			Kunitz family trypsin and prot...		Lus10042301 [exp]	7.7	0.9847

Compare expression of checked genes

Lus10006157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.