Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48100 73 / 2e-14 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G09360 73 / 2e-14 LAC14 laccase 14 (.1) AT5G07130 68 / 8e-13 LAC13 laccase 13 (.1) AT5G01040 66 / 3e-12 LAC8 laccase 8 (.1) AT2G30210 66 / 4e-12 LAC3 laccase 3 (.1) AT2G40370 66 / 5e-12 LAC5 laccase 5 (.1) AT2G38080 63 / 4e-11 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT3G09220 62 / 7e-11 LAC7 laccase 7 (.1) AT5G05390 62 / 1e-10 LAC12 laccase 12 (.1) AT5G01050 61 / 2e-10 Laccase/Diphenol oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041066 [exp] 179 / 1e-21 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10041067 [exp] 84 / 3e-18 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10006157 [exp] 81 / 4e-17 AT5G09360 533 / 0.0 laccase 14 (.1) Lus10026812 [exp] 71 / 1e-13 AT5G09360 540 / 0.0 laccase 14 (.1) Lus10042251 [exp] 67 / 3e-13 AT5G07130 212 / 7e-66 laccase 13 (.1) Lus10035517 [exp] 67 / 3e-12 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 67 / 3e-12 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017427 [exp] 66 / 8e-12 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10027747 [exp] 65 / 1e-11 AT3G09220 707 / 0.0 laccase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206200 [exp] 81 / 3e-17 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.011G071100 [exp] 80 / 7e-17 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200600 [exp] 80 / 7e-17 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200500 [exp] 79 / 1e-16 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200700 [exp] 73 / 2e-14 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.019G088401 [exp] 71 / 7e-14 AT5G09360 592 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 71 / 1e-13 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088600 [exp] 71 / 1e-13 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 71 / 1e-13 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 71 / 1e-13 AT5G09360 598 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10006158 pacid=23148570 polypeptide=Lus10006158 locus=Lus10006158.g ID=Lus10006158.BGIv1.0 annot-version=v1.0 ATGGGGAATTCCCAGGGCCAAAGAGGAGACATCAACTTCGTCGATGTTATTAACAATAGTCTACATAACGTAACACTTCACTGGCACGGCGTTATCCAGC CAAGGATTCCATGGATCGATGGTCCGGAATACATCACCCAATGTCCGATCCAACCAGGACTACACGAAGCAGTTTACAACAGATTACGTAACCATCTCCC CCGGTCAAACCATGGACGTTTTGCTAGAAGCAAAGCCATTGCCCGATTCATTGCGAAGAACACGTTATTAAATGGCCGCCAATGTATTCTCCAGCAACCC AGGTCCCAGGTTCTTCAAACCCATCGCTGCCACTGCCAATCTGAGATACGACCACAATACGACCACAACCCTTCATTACCCGATCTGCCAATACCGTCAC TACCCATCCTCCCGCGCGTGAACGACTCCGAGTCGACAATCAGCTTCGGCCGTCGACCGAGAAGCCTATCCATTCCAGCCGACTACCCGGTCCCACGGAA AGTCAACACAAACATATTCCTAACACTCTCCATTAACATCCAACCTTGTTCAACCCACAACTGCCAGGGCCCCTTCGGCAACATACTGGCCGCCAGCGTC AACAATATCAGCTTCGTCCACCCGACATCAATGGACATCCTCTGCGCGTACTACCGCAACATCAGCGGGGTCTACGACGTGGAGGACATCCAGCGCGGAC ATCCAGCGCATACCGGCGGAGGGGAGCCGCGTCTGCGGAGCGTGGGACGAAAGTGCAATTGCAAATCAAATGTAGAACTCAAAATAGTCCATTTGTATTT GTTATAG
AA sequence Show only first row Show all	>Lus10006158 pacid=23148570 polypeptide=Lus10006158 locus=Lus10006158.g ID=Lus10006158.BGIv1.0 annot-version=v1.0 MGNSQGQRGDINFVDVINNSLHNVTLHWHGVIQPRIPWIDGPEYITQCPIQPGLHEAVYNRLRNHLPRSNHGRFARSKAIARFIAKNTLLNGRQCILQQP RSQVLQTHRCHCQSEIRPQYDHNPSLPDLPIPSLPILPRVNDSESTISFGRRPRSLSIPADYPVPRKVNTNIFLTLSINIQPCSTHNCQGPFGNILAASV NNISFVHPTSMDILCAYYRNISGVYDVEDIQRGHPAHTGGGEPRLRSVGRKCNCKSNVELKIVHLYLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09360		LAC14	laccase 14 (.1)		Lus10006158 [exp]	0	1

Compare expression of checked genes

Lus10006158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.