Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10020 484 / 2e-172 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50700 239 / 1e-76 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 239 / 1e-76 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50690 207 / 6e-65 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 207 / 6e-65 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G50770 206 / 8e-64 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47350 203 / 2e-63 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 200 / 7e-62 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 75 / 5e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 69 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041045 [exp] 676 / 0 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 535 / 0 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 529 / 0 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10022441 [exp] 247 / 5e-80 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10016748 [exp] 251 / 1e-79 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10043187 [exp] 241 / 2e-77 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 241 / 3e-77 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 226 / 3e-71 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 224 / 8e-71 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100200 [exp] 521 / 0 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 520 / 0 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.012G102000 [exp] 238 / 7e-77 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.015G100000 [exp] 229 / 2e-73 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 228 / 9e-73 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 227 / 2e-72 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 224 / 2e-71 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 184 / 2e-55 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.008G149201 [exp] 74 / 8e-15 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 71 / 1e-13 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006178 pacid=23148559 polypeptide=Lus10006178 locus=Lus10006178.g ID=Lus10006178.BGIv1.0 annot-version=v1.0 ATGGTGGTGATGGCTTGTTCCTGGCCTGCCTTGTGCTTCATCAACACTTTTGAGTGGCTCTACAACAGCTTCTACGGTGACGATATGGAAGACAAAGTTG TCATCGTCACCGGTGCTTCTTCTGCCATTGGCGAGCAAATCGCGTACGAATATGCAAAGAGGAGGGTGAACCTCGTATTGGTTGCACGTAGAGAGAACCG GCTGCGAGCAATCAGCGAGAAAGCTAGACTTATGGGTGCTAAGCATGTCATGATTGTAGCCGCAGATGTGGTCAAGGAAGATGACTGCAGGAGATTCGTT GATCAGACTGTGAGCTACTATGGTCGAGTTGATCATCTTGTGAACACTGTAAGCTTGGGTCACACGTTCTACTTAGAAGAAGCTCTAGACACCTCTGTGT TCCCACATTTGATGGACATCAATTTTTGGGGGAATGTGTATCCAACTTATGTGGCTCTACCGCATCTGCATCAGACCAATGGAAGAATCGTTGTAAATGC TGCAGTTGAGACCTGGTTACCTCTCCCAAGGATGAGCTTGTATGCTGCTGCGAAAGCTGCAGTAATAAACTTCTATGAGACGCTGAGGTACGAAGTGAGC GATGAAATCGGAGTAACCATTGCGACACACGGTTGGGTTGGTAGCATCTTAATGAGTGGGGGCAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGA GAGAAGAAAGAGAAGGGAACGTAAGTAGCGGTCCGCTCGAGAATTACGCGAGGATGATCGTATCGGGGGCTTGTCGCGGAAACCACTACGTAAGGTACCC GAGCTGGTATGACATCTTCCTCCTGTACAGGTTATTTGCGCCGGGTGTCCTCAACTGGACACTCAGGCAGCTACTAGCTTCTCACGGAGCAAGACGGACA TCCCTGATAGGCACGGGAAGGCCGTTGTTGGAAGGCAGCCCATCAGGCAGTCCATCTGCGGCACGAAATACTGTCGCGGGTACTGTCACATTATCCTCAA GAAGTCCGGTGCAGATGCAGAAACTCGAGTAA
AA sequence Show only first row Show all	>Lus10006178 pacid=23148559 polypeptide=Lus10006178 locus=Lus10006178.g ID=Lus10006178.BGIv1.0 annot-version=v1.0 MVVMACSWPALCFINTFEWLYNSFYGDDMEDKVVIVTGASSAIGEQIAYEYAKRRVNLVLVARRENRLRAISEKARLMGAKHVMIVAADVVKEDDCRRFV DQTVSYYGRVDHLVNTVSLGHTFYLEEALDTSVFPHLMDINFWGNVYPTYVALPHLHQTNGRIVVNAAVETWLPLPRMSLYAAAKAAVINFYETLRYEVS DEIGVTIATHGWVGSILMSGGKFMLEEGAEMQWREEREGNVSSGPLENYARMIVSGACRGNHYVRYPSWYDIFLLYRLFAPGVLNWTLRQLLASHGARRT SLIGTGRPLLEGSPSGSPSAARNTVAGTVTLSSRSPVQMQKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	4.0	0.7581
AT4G39100		SHL1	short life, PHD finger family ...		Lus10017482 [exp]	4.8	0.7794
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10041455 [exp]	4.9	0.7615
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	7.9	0.7621
AT3G02360			6-phosphogluconate dehydrogena...		Lus10029098 [exp]	10.5	0.7098
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	11.0	0.7443
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	12.2	0.6734
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10011729 [exp]	14.7	0.7130
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003688 [exp]	15.2	0.7045
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10025350 [exp]	17.5	0.7238

Compare expression of checked genes

Lus10006178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.