Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71520 107 / 1e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22810 100 / 7e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G74930 89 / 4e-23 AP2_ERF ORA47, ERF018 Integrase-type DNA-binding superfamily protein (.1) AT1G19210 87 / 4e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G21910 80 / 4e-19 AP2_ERF DREB26 dehydration response element-binding protein 26, Integrase-type DNA-binding superfamily protein (.1) AT1G71450 77 / 2e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G67190 77 / 2e-18 AP2_ERF DEAR2 DREB and EAR motif protein 2 (.1) AT3G50260 76 / 3e-18 AP2_ERF DEAR1, CEJ1, ATERF#011 DREB AND EAR MOTIF PROTEIN 1, cooperatively regulated by ethylene and jasmonate 1 (.1) AT4G36900 76 / 7e-18 AP2_ERF DEAR4, RAP2.10 DREB AND EAR MOTIF PROTEIN 4, related to AP2 10 (.1) AT5G21960 76 / 2e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041044 [exp] 164 / 8e-53 AT1G71520 138 / 9e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10009468 [exp] 123 / 4e-37 AT1G22810 132 / 1e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10038082 [exp] 86 / 3e-21 AT5G21960 155 / 3e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10009798 [exp] 82 / 1e-20 AT1G19210 132 / 1e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10033420 [exp] 81 / 1e-19 AT1G19210 181 / 4e-58 Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 79 / 3e-19 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10034885 [exp] 78 / 2e-18 AT1G19210 172 / 2e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10009373 [exp] 76 / 4e-18 AT5G67190 164 / 3e-52 DREB and EAR motif protein 2 (.1) Lus10018727 [exp] 73 / 7e-17 AT5G67190 162 / 1e-51 DREB and EAR motif protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100300 [exp] 116 / 5e-34 AT1G22810 140 / 5e-43 Integrase-type DNA-binding superfamily protein (.1) Potri.019G073300 [exp] 116 / 1e-33 AT1G22810 144 / 1e-44 Integrase-type DNA-binding superfamily protein (.1) Potri.006G218200 [exp] 88 / 3e-22 AT1G19210 176 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138700 [exp] 83 / 2e-20 AT1G19210 174 / 1e-55 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138800 [exp] 83 / 2e-20 AT1G19210 189 / 3e-61 Integrase-type DNA-binding superfamily protein (.1) Potri.018G047300 [exp] 82 / 2e-20 AT1G19210 169 / 1e-53 Integrase-type DNA-binding superfamily protein (.1) Potri.002G085600 [exp] 76 / 8e-18 AT1G77640 127 / 3e-36 Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 76 / 2e-17 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.005G176000 [exp] 75 / 2e-17 AT1G21910 140 / 3e-41 dehydration response element-binding protein 26, Integrase-type DNA-binding superfamily protein (.1) Potri.013G101100 [exp] 74 / 3e-17 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10006179 pacid=23148540 polypeptide=Lus10006179 locus=Lus10006179.g ID=Lus10006179.BGIv1.0 annot-version=v1.0 ATGAGCAGCAGCACCGGCGATAAGAAATATAAAGGGGTCCGCCGCCGGAAATGGGGGAAATGGGTGTCAGAAATCCGGGTCCCCGGATCCCAGGAGCGGC TCTGGCTCGGGTCTTATTCTTCGCCTGAGGCTGCCGCCGTCGCCCACGACATTGCTTACTATTGCCTGCGGCGGGGCGATACGTCTTCGTTGTCGTCGGC GGGGAGGTGCTGCAATTTCCCACTAGCGTCATTGCCGACGAGCGTGCTCCGGCCTGATTTGTCGCCGAAGTCCGTCCAGAGGGCGGCTTCAGATGCCGGA ATGGCGGGGGGGGGGGGGGGGGGCGCGCGGGACGAGGGCTGGATTTGTCGCCCGAGTCCGGCCAGGGGGCGGCTTCAGATGCCGGAAGGGCGGTGGACGC GCAGCTGA
AA sequence Show only first row Show all	>Lus10006179 pacid=23148540 polypeptide=Lus10006179 locus=Lus10006179.g ID=Lus10006179.BGIv1.0 annot-version=v1.0 MSSSTGDKKYKGVRRRKWGKWVSEIRVPGSQERLWLGSYSSPEAAAVAHDIAYYCLRRGDTSSLSSAGRCCNFPLASLPTSVLRPDLSPKSVQRAASDAG MAGGGGGGARDEGWICRPSPARGRLQMPEGRWTRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006179 [exp]	0	1
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	20.0	0.6616
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	23.2	0.6646
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10000125 [exp]	38.7	0.5338
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	55.3	0.5376
AT5G57550		XTR3, XTH25, EX...	xyloglucan endotransglycosylas...		Lus10012834 [exp]	70.8	0.5559
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	79.1	0.5782
AT3G15280			unknown protein		Lus10005404 [exp]	133.4	0.5609
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001557 [exp]	148.9	0.5519
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	181.3	0.5320
AT1G70140		ATFH8	formin 8 (.1)		Lus10004244 [exp]	185.5	0.5196

Compare expression of checked genes

Lus10006179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.