Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67730 160 / 4e-48 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT1G24470 155 / 3e-46 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011396 [exp] 165 / 5e-50 AT1G24470 357 / 7e-124 beta-ketoacyl reductase 2 (.1) Lus10006248 [exp] 155 / 2e-46 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1) Lus10036940 [exp] 154 / 1e-45 AT1G67730 449 / 4e-160 beta-ketoacyl reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052400 [exp] 180 / 8e-56 AT1G67730 320 / 3e-109 beta-ketoacyl reductase 1 (.1) Potri.010G052300 [exp] 161 / 1e-48 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1) Potri.008G181700 [exp] 159 / 7e-48 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.010G052500 [exp] 153 / 2e-45 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.008G181600 [exp] 149 / 5e-44 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006249 pacid=23139702 polypeptide=Lus10006249 locus=Lus10006249.g ID=Lus10006249.BGIv1.0 annot-version=v1.0 ATGAGAGGACGGGAGATTTCAGAAGCTGTCGCTGAAGGTATTGAAGGGCTGGACGTCGGGATTCTCTTTAACAACGCCGGAGTTTGCTACCCATTCGCCC AGTTTTTCGACGAGGTCGGCCTGGAGGTCGTCGAGAGATTGCTGAGGGTGAACGTTGAGGCGGCGACTTGGGTTGTTAAGGCGGTGGTTCCGGCTATGTT GAGGAAAGGGAAAGGAGCGGTCGTTAATATTGGTTCTGGATCGTCTGTGGTCGTCCCGTCATATCCTTTAGTGACGATTTATGCTGCCAGTAAAGCGTAT CTTGCCATGCTCTCAAGAAGCTTGAGTTTGGAGTATAAACAGTATGGGATTGATATTCAATGCCAGATTCCGCTCATGGTAGCAACGAAGATGACGAAGA TAAGGAAATCGAACATACGAGCTCCGTCACCAGCGGAATATGCCAAGGCAAGCCTAAGATTCGTCGGCTACGAGGAAATTTGCTGCCCATATTGGTCTCA TTACTTGGAATGGAAGTTTCTCAAACTTCTGCCGGATGCTCTCGTCAACTGGTTGACTTTTCGTTACTTGTTTCAACAACGAAAAAGGGCCCTCGCTAAA GCTAAGGCTCGTTCTTTAAGCCGAAATTAA
AA sequence Show only first row Show all	>Lus10006249 pacid=23139702 polypeptide=Lus10006249 locus=Lus10006249.g ID=Lus10006249.BGIv1.0 annot-version=v1.0 MRGREISEAVAEGIEGLDVGILFNNAGVCYPFAQFFDEVGLEVVERLLRVNVEAATWVVKAVVPAMLRKGKGAVVNIGSGSSVVVPSYPLVTIYAASKAY LAMLSRSLSLEYKQYGIDIQCQIPLMVATKMTKIRKSNIRAPSPAEYAKASLRFVGYEEICCPYWSHYLEWKFLKLLPDALVNWLTFRYLFQQRKRALAK AKARSLSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	1.4	0.9617
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	1.7	0.9695
AT1G01300			Eukaryotic aspartyl protease f...		Lus10039126 [exp]	1.7	0.9614
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	2.8	0.9328
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	6.0	0.9172
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	6.3	0.9520
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	7.1	0.9464
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	7.5	0.9123
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	9.0	0.9326
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	9.5	0.9358

Compare expression of checked genes

Lus10006249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.