Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12610 192 / 1e-61 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT4G25470 187 / 8e-60 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT5G51990 184 / 1e-58 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT1G63030 182 / 3e-58 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT4G25490 177 / 5e-56 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT4G25480 176 / 2e-55 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT5G25810 120 / 1e-33 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 117 / 3e-32 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G52020 117 / 5e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 114 / 2e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001871 [exp] 415 / 2e-149 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 390 / 2e-139 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029601 [exp] 374 / 3e-133 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029602 [exp] 273 / 4e-94 AT1G12610 181 / 2e-58 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10024491 [exp] 215 / 1e-70 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10017829 [exp] 189 / 6e-61 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027414 [exp] 181 / 1e-57 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031654 [exp] 179 / 6e-57 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031657 [exp] 179 / 4e-56 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110700 [exp] 223 / 1e-73 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 209 / 9e-68 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.012G134100 [exp] 195 / 2e-62 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 183 / 7e-58 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.009G147700 [exp] 138 / 9e-40 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 129 / 1e-36 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.003G121200 [exp] 113 / 2e-31 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 112 / 6e-30 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 111 / 7e-30 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 110 / 1e-29 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10006332 pacid=23178364 polypeptide=Lus10006332 locus=Lus10006332.g ID=Lus10006332.BGIv1.0 annot-version=v1.0 ATGGAAATGAACTTCAACACTCATCACTCAGCAACCGACTCCTCCGGCGGCGGCCACAAGCTGGCGGCCGAGAATCCGAAGAAGAAAGCCGGAAGGAGGG TGTTCAAGGAGACACGTCACCCTGTCTACCGAGGAGTGCGCAAGAGGAACGGAGACAAGTGGGTCTGCGAGCTGCGCGAGCCACAGAGCAAGACACGTGT CTGGCTCGGAACTTACCCGACTGCTGAGATGGCAGCCCGCGCTCATGACGTGGCTGCCCTCTCCTTCCGCGGGAAATCCGCTTGCTTGAACTTCGCTGAC TCCGCCTGGCGGCTCCCTCTCCCCACTTCCAATGATAACAAGGACGTCAGGATGGCTGCTTCTCGCGCCGCCGAAATGTTCCGCCCCGTGGATTGCGGGA GTACTGCCAGTGGAAGCTCTTTCAACTCCCCTCCTGCTGACCTCAGCTCCTCCGCCGCACCTTTGGCTTCGGCGGAGGAGTGTTGGTGGAGTGAAGTGAG CAGTAACGTTGGTAATGGTGGGTATTATGTGGATGAAGAGCTGAATATGCCGAGGTTGTTATCGGAGATGGCGGAAGGATTGTTGTTGTCTCCGCCGCCG AGTTACGGAGCAGTGGAGGATGGTAGTAATGACGATGATCAGTGGGGATACAATGGCGGTAATGACTGGTCGTTATGGAACTAG
AA sequence Show only first row Show all	>Lus10006332 pacid=23178364 polypeptide=Lus10006332 locus=Lus10006332.g ID=Lus10006332.BGIv1.0 annot-version=v1.0 MEMNFNTHHSATDSSGGGHKLAAENPKKKAGRRVFKETRHPVYRGVRKRNGDKWVCELREPQSKTRVWLGTYPTAEMAARAHDVAALSFRGKSACLNFAD SAWRLPLPTSNDNKDVRMAASRAAEMFRPVDCGSTASGSSFNSPPADLSSSAAPLASAEECWWSEVSSNVGNGGYYVDEELNMPRLLSEMAEGLLLSPPP SYGAVEDGSNDDDQWGYNGGNDWSLWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006332 [exp]	0	1
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10001871 [exp]	1.0	0.9970
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006334 [exp]	2.0	0.9921
AT5G38700			unknown protein		Lus10002433 [exp]	4.9	0.9541
AT3G03280			unknown protein		Lus10007960 [exp]	4.9	0.9461
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	5.2	0.9186
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	7.7	0.9268
AT5G38700			unknown protein		Lus10001456 [exp]	8.4	0.9342
AT1G29290			unknown protein		Lus10007309 [exp]	10.2	0.9219
AT3G03280			unknown protein		Lus10013490 [exp]	10.6	0.9241
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	14.8	0.9110

Compare expression of checked genes

Lus10006332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.