Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 634 / 0 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 567 / 0 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 548 / 0 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 475 / 3e-164 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 407 / 8e-137 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 226 / 1e-65 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G66350 221 / 1e-65 GRAS RGL1 RGA-like 1 (.1) AT1G14920 218 / 2e-64 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 218 / 2e-64 GRAS RGL2 RGA-like 2 (.1) AT2G01570 216 / 3e-63 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012323 [exp] 1024 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10016596 [exp] 629 / 0 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 520 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 520 / 0 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10035840 [exp] 491 / 1e-169 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 471 / 6e-163 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 414 / 6e-144 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 403 / 2e-135 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 402 / 6e-135 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164400 [exp] 776 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 631 / 0 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.016G009700 [exp] 542 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 530 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.001G409500 [exp] 505 / 3e-175 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 499 / 9e-173 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 429 / 3e-145 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 421 / 3e-142 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 261 / 2e-79 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 248 / 1e-74 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10006369 pacid=23162636 polypeptide=Lus10006369 locus=Lus10006369.g ID=Lus10006369.BGIv1.0 annot-version=v1.0 ATGTCGGGCGGCCTATATTATCAACCGTTGCAAGAATTTGAGGCGAACTACATGCCTCAGTTCCAAAATTTAGCTCACCAGCTCTGTTACAATGGTAGCA GCAGCCAAGCAACTCACTTTCCCTTCCAGACTGAACAATACTGCACATTGGAGTCATCTTCCCTCAATGGCACCACCTATGCTGCAATCTACAACAACTT TTCGCCAAATGGAAGCCCGATGTCACAGCACGAGTCTCCTATAAGCAGCTCGTGCATTACCGACGATGCTAATGACATCAAACACAAGTTGAGGGAGTTG GAGACTGCTATGTTGGGTCCTGATTCTGATAACTTTGTTATGAGCATGGATGGTAGAACTGTTCAGGAAGGGATTAAGATCGAGTCCCCGGAGATTGACT GTTTAAGGGAAATAATGGGGGCAATATCTAGAGGGGAACTTAAACAGGTTCTCGTTGCCTGCGCCAAGGCAGTATCCGAAAACGATCAGTTGATAGCTCA ATGGTTGATCGACGAGCTTCGCAACATGGTGTCAGTGTCCGGGGAACCTATTCAAAGGCTAGGTGCATACATGTTGGAAGGACTCGTTGCTAGGATGTCC TCCTCCGGGAGCTCGATCTGCAAGGCCTTGAGATGTAAAGATCCAGCGAGTGCCGATCTGCTCTCTTATATGCACATTCTGTACGAGGTTTGTCCTTATC TCAAATTCGGGTACATGTCTGCAAATGGTGCCATTGCAGAAGCTATGAAGGGCGAAAACCGGGTCCACATTGTGGACTTTCAGATTGGTCAAGGGAGTCA ATGGATCAGTCTTATTCAGGCATTTGCAGCTAGGCCAGGCGGGCCCCCATTCATCCGGATTACCGGGGTTGATGACTCCACGTCAGCCTATGCACGCGGA GGAGGACTAAACATTGTTGGGAAGAGGCTCTCTAAGCTGGCCAAGTCATTCAAGGTACCATTCGAGTTCCATGCTGCTGCACTGAATGGCTGCGAAGTCC AAGTGGAGAATCTTGAAATTCGGCCGGGGGAAGCTCTAGCTGTGAACTTTGCCTTCATGCTTCATCACATGCCTGACGAGAGTGTCAGCACCGAGAATCA TCGCGACCGGCTGTTGAGGCTGGTAAAGGGCCTGTCTCCGAAAGTGGTGACCCTTGTCGAGCAGGAAGCCAACACAAACACCGCTGCATTCTTCCCGAGG TTTCTCGAGACACTAGACTACTATACAGCAATGTTCGAGTCGATGGACGTGACCCTCCAACGAGACCATAAAGACCGGATCAGCATCGAGCAGCATTGCC TCGCAAAGGATGTCGTTAACGTGATTGCTTGCGAGGGTGGCGAGAGGGTCGAGCGACATGAACTTCTCGGTAAATGGAAGTCGAGGTTTTCCATGGCGGG ATTTAGTCCGTGCCCTTTGAGCTCTTTGGTAAACGCCACCATAAAAACACTGCTGGCGAACTACAGCAAGCAATACAGGCTTGAAGAGAAGGCTGGGGCT TGA
AA sequence Show only first row Show all	>Lus10006369 pacid=23162636 polypeptide=Lus10006369 locus=Lus10006369.g ID=Lus10006369.BGIv1.0 annot-version=v1.0 MSGGLYYQPLQEFEANYMPQFQNLAHQLCYNGSSSQATHFPFQTEQYCTLESSSLNGTTYAAIYNNFSPNGSPMSQHESPISSSCITDDANDIKHKLREL ETAMLGPDSDNFVMSMDGRTVQEGIKIESPEIDCLREIMGAISRGELKQVLVACAKAVSENDQLIAQWLIDELRNMVSVSGEPIQRLGAYMLEGLVARMS SSGSSICKALRCKDPASADLLSYMHILYEVCPYLKFGYMSANGAIAEAMKGENRVHIVDFQIGQGSQWISLIQAFAARPGGPPFIRITGVDDSTSAYARG GGLNIVGKRLSKLAKSFKVPFEFHAAALNGCEVQVENLEIRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQEANTNTAAFFPR FLETLDYYTAMFESMDVTLQRDHKDRISIEQHCLAKDVVNVIACEGGERVERHELLGKWKSRFSMAGFSPCPLSSLVNATIKTLLANYSKQYRLEEKAGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	0	1
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	2.4	0.8918
AT5G08060			unknown protein		Lus10021149 [exp]	3.7	0.9071
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	8.3	0.8806
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10035117 [exp]	10.6	0.8584
AT4G09890			Protein of unknown function (D...		Lus10028734 [exp]	15.7	0.8744
AT1G59740			Major facilitator superfamily ...		Lus10007437 [exp]	15.9	0.8413
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	16.2	0.8649
AT3G15610			Transducin/WD40 repeat-like su...		Lus10043302 [exp]	16.6	0.8601
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	16.7	0.8640
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Lus10030192 [exp]	19.1	0.8651

Compare expression of checked genes

Lus10006369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.