Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07740 560 / 0 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 488 / 1e-168 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT1G21700 62 / 7e-10 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT4G34430 55 / 2e-07 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT2G33610 49 / 1e-05 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017553 [exp] 545 / 0 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Lus10000540 [exp] 493 / 3e-170 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4) Lus10012337 [exp] 189 / 2e-57 AT3G07740 64 / 2e-14 homolog of yeast ADA2 2A (.1.2.3.4) Lus10023583 [exp] 72 / 1e-12 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10040472 [exp] 69 / 1e-11 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 66 / 8e-11 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 62 / 8e-10 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 53 / 7e-07 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10016043 [exp] 52 / 7e-07 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166300 [exp] 678 / 0 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.006G017300 [exp] 550 / 0 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 531 / 0 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.004G135400 [exp] 90 / 9e-21 AT4G16420 102 / 9e-26 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.005G180800 [exp] 60 / 3e-09 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.002G080600 [exp] 57 / 2e-08 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 54 / 2e-07 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 54 / 4e-07 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G004800 [exp] 45 / 9e-05 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006383 pacid=23162668 polypeptide=Lus10006383 locus=Lus10006383.g ID=Lus10006383.BGIv1.0 annot-version=v1.0 ATGGGGCGCTCCCGGGCGGCCCCTCGACCGGTCAACGACGATCAAAACCCTAGATCAAAGAGAAGAAAGACTGGTGCGGTTGCTGCCCAGACTGTAGAGA ATGCTTCTGCTGCTACAGGCATGCTTTCAGTAAACTCATCACCTTTGTGTGTCTTCATAGTAGTTCCACACTCCAACCCTTCTCCAATATCCCAAGAGAC TGGGAAACCTTCCATTTACCACTGTAATTACTGCCGCAAGGACATATCCGGGGTGGTTCGCATGAAGTGTGCAGTGTGTCCTGATTTTGACCTCTGTGTC GAGTGCTTTTGTGTTGGAGCTGAACTTTTTCCTCACAAAAGCATTCATCCGTATAGGATCATGGACAATTTATCTTTCCCACTCATTACTCCAGATTGGA ATGCAGATGAAGAGATGTTACTCCTAGAGGGCATCGAAATGTATGGATTCGGAAACTGGGCCGAAGTTGCAGAACACGTTGGGTTGAAAAGCAAACCAGA GTGTATTGATCACTATACCGCTGTCTACATGAACTCCCCATGTTTTCCTCTCCCTGACATGTCTCATATTAGGGGAAAGAGCAGAGAGGAACTTCTTGCA ATGGCCAAGGAACGTGATGCAAACACAAAAAAACCTTCTGTGCTTGAAGAGCTTATTGTTAAAGACGAGTCTTCCGCTGGTGAAAAAATCAAGAGTGAAG AATCAACCCCCAAAAATGAAGATTTAGATTCTCCATTCAGTGCTGTCGGGTGTCATACTGGCTCAAGTAGCAGTAAGACCTTCCCTAGTGGTATGAAGAA GGCATCTACCGCAGCCCAATTGAAGGACACTGTCAAAGTGGAGGAATCCCAAGCTGACAGAAGCATAAGTGAAAAAAAACCTAGAGGTTTGGCAGAAGAG GGGCCTTCTTTAACTGAGTTAAGTGGCTATAATTTCAAAAGGCGGGAGTTTGAGATTGAATACGACAATGATGCCGAACAAATACTTGCAGACATGGAAT TCAAGGATACTGATACCAACGATGAGCGTCAACTCAAACTTCAAGTGCTTCATATTTATGGGAAAAGACTTGATGAGAGGAAACGGCGAAAAGAGTTCAT ACTAGAAAGGAATCTACTTTACCCTGATCCATTCGAGAAAAGCCTGTCAACTGAAGAGAAGGAACTATATAAACGTTACAAGGTCTTCATGAGGTTCCAA TCGAAGGAAGAGCATTTGGAGTTGATGAAGAATGTCATCGACGAGTACCGGATTGCCAAACGAATAAAAGAGCTCCAGGAAGCTCGAGCTGCTGGCTGTT GTACAGCTGCTGAGGCAAACCGATTCATTGAGGCAAAGAAGATGAAGGAAGTCGAAGAGAGAGCGAAGGAAACCACACAAGGCGCTCCAAGTGGCAAAGG ACTGCTCAAATCAAGCGATCAACTCAAAGCAGAAATTGATGGCAACAGTAGCAGCCCTCGAGGAGCCGGCAAGAGTCCAACTGGTTCCCAACAAGCCATC CCAGATGTACTGAACATATGGGATATCACTGGGTTCCCAGGAGCCAATTTGCTGTCTGAACCTGAGAAGCAACTGTGCAATGAAATGAGAATACTGCCAG CACACTATCTGAAAATGCTTCAGATAATATCGACAGAGGTGCTGAACGGGAGTGTCAAGAAGAAAGCTGACGCGCACAGCTTATTCAAGGTGGAACCTAG CAAGATTGACAGAGTCTATGATATGCTGGTGAAGAAAGGAATCGCTCAAGGTTGA
AA sequence Show only first row Show all	>Lus10006383 pacid=23162668 polypeptide=Lus10006383 locus=Lus10006383.g ID=Lus10006383.BGIv1.0 annot-version=v1.0 MGRSRAAPRPVNDDQNPRSKRRKTGAVAAQTVENASAATGMLSVNSSPLCVFIVVPHSNPSPISQETGKPSIYHCNYCRKDISGVVRMKCAVCPDFDLCV ECFCVGAELFPHKSIHPYRIMDNLSFPLITPDWNADEEMLLLEGIEMYGFGNWAEVAEHVGLKSKPECIDHYTAVYMNSPCFPLPDMSHIRGKSREELLA MAKERDANTKKPSVLEELIVKDESSAGEKIKSEESTPKNEDLDSPFSAVGCHTGSSSSKTFPSGMKKASTAAQLKDTVKVEESQADRSISEKKPRGLAEE GPSLTELSGYNFKRREFEIEYDNDAEQILADMEFKDTDTNDERQLKLQVLHIYGKRLDERKRRKEFILERNLLYPDPFEKSLSTEEKELYKRYKVFMRFQ SKEEHLELMKNVIDEYRIAKRIKELQEARAAGCCTAAEANRFIEAKKMKEVEERAKETTQGAPSGKGLLKSSDQLKAEIDGNSSSPRGAGKSPTGSQQAI PDVLNIWDITGFPGANLLSEPEKQLCNEMRILPAHYLKMLQIISTEVLNGSVKKKADAHSLFKVEPSKIDRVYDMLVKKGIAQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	0	1
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	3.5	0.8643
AT1G03180			unknown protein		Lus10000654 [exp]	3.6	0.8480
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	4.5	0.8608
AT3G62140			unknown protein		Lus10038035 [exp]	6.4	0.8748
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	9.2	0.8709
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10026955 [exp]	11.8	0.8456
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	12.7	0.8461
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	15.5	0.8667
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	17.4	0.8476
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	17.8	0.8261

Compare expression of checked genes

Lus10006383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.