Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67710 369 / 1e-123 GARP ARR11 response regulator 11 (.1) AT4G16110 283 / 9e-89 GARP ARR2 response regulator 2 (.1) AT3G16857 280 / 1e-87 GARP ARR1 response regulator 1 (.1.2) AT2G01760 267 / 7e-86 GARP ARR14 response regulator 14 (.1) AT2G25180 269 / 3e-84 GARP ARR12 response regulator 12 (.1) AT4G31920 239 / 6e-73 GARP ARR10 response regulator 10 (.1) AT5G58080 214 / 4e-63 GARP ARR18 response regulator 18 (.1) AT5G49240 169 / 5e-49 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 122 / 6e-31 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT2G27070 114 / 4e-27 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011389 [exp] 656 / 0 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10016846 [exp] 300 / 7e-95 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 300 / 1e-94 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 265 / 4e-82 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 265 / 1e-81 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 248 / 2e-76 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 236 / 7e-72 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 170 / 4e-48 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 150 / 8e-40 AT4G16110 169 / 4e-45 response regulator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053100 [exp] 420 / 2e-143 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 417 / 1e-141 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.008G213500 [exp] 300 / 7e-95 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 298 / 2e-94 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 287 / 4e-90 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 282 / 1e-88 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.006G188000 [exp] 270 / 1e-83 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 269 / 6e-83 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G262100 [exp] 254 / 1e-77 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 245 / 2e-74 AT2G25180 364 / 2e-117 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006446 pacid=23171991 polypeptide=Lus10006446 locus=Lus10006446.g ID=Lus10006446.BGIv1.0 annot-version=v1.0 ATGGAGAATAATGGCCACTCTTCTCCAAGAACTGATGCTTTCCCAGCTGGTCTCCGGGTCCTAGTGGTGGATGATGATCCCACTTGGCTCAAAATCCTTG AGAAGATGCTCAGGAAATGCTCCTATGAAGTTACCACCTGTGGTTTAGCAAGAGATGCTCTGAACAAGCTCCGCGAGAGAAAAGATGGATACGACATAGT GATCAGCGATGTCAACATGCCAGACATGGATGGCTTTAAGCTTCTTGAACATGTCGGGCTCGAGATGGATCTTCCCGTGATCATGATGTCTGTTGACGGA GAAACAAGTAGGGTGATGAAGGGAGTTCAACACGGAGCATGTGATTACCTCCTGAAGCCCATCAGGATGAAAGAGCTCAGGAACATATGGCAGCATGTCT TACGCAAGAGGATCCACGAGGTACGAGACATCGAAAGCTTCGATACTGGCGGCATTGAGAGCAGTACTATCCAAATGTCCGATGATGCACACTTGTTCTT CTGCGGAGGAGACGACTTTTCCTCAATGAAGAGGAGGAAAGATCACTACGACGACAATAACGATACCTCCTCCTCGTCTACTAAGAAAGCTAGAGTGGTT TGGTCTGTTGATCTTCACCAGAAGTTCGTCAAGGCTGTAAACCAAATAGGATATGACAAAGTTGGCCCTAAGAAAATCCTCGATCTGATGAACGTTCCAT GGTTGACAAGGGAAAATGTTGCAAGCCATTTGCAGAAATACCGCCTCTACTTGAGCCGGCTGCCGAAGGATAGCAGTGATCAGAAGACATCCATTGGCAG TTTGAAGTATTCAGATTCACCTTCTAGCAATGCTTTTCTATTCAATGTCAACTATGGGATTCCAAGCAGTACCTTGGTTGACCGAAAGACCGTCTCTTCA GCTACTGCTGGACGAAAACGAGCTTTAACCGTGGACATTCCTGATACACACATACCTACCAAGGCAGCAAGAACCGATCTTGGTCAAACTTTCGGTTCGT CCCAAGCACCATACATCACACAACACCAGTGTGTGAGTGGCGAATCTGGCTGCATTCCGGGGTTCCAGTGCAGCCAGAGACGGCAGAACTTGGGGTTGTT ATCTCCTTACCCGGTGATCGATGAGGACCTGCAACTGTTCTTGTTACAAGGCGGACTCCAGAATATGGACTTTCCTCCCGAGTACTTTGACCACCACCCG GGGTTCGTTTCTGAAGATGCAATGAGCTTGTATGATGCTGCGAGGTTCGACTACGACCCGACAGAGCATTTGGTGATAGATCAAGGTTTGTTTATATCAT AA
AA sequence Show only first row Show all	>Lus10006446 pacid=23171991 polypeptide=Lus10006446 locus=Lus10006446.g ID=Lus10006446.BGIv1.0 annot-version=v1.0 MENNGHSSPRTDAFPAGLRVLVVDDDPTWLKILEKMLRKCSYEVTTCGLARDALNKLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDG ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEVRDIESFDTGGIESSTIQMSDDAHLFFCGGDDFSSMKRRKDHYDDNNDTSSSSTKKARVV WSVDLHQKFVKAVNQIGYDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLPKDSSDQKTSIGSLKYSDSPSSNAFLFNVNYGIPSSTLVDRKTVSS ATAGRKRALTVDIPDTHIPTKAARTDLGQTFGSSQAPYITQHQCVSGESGCIPGFQCSQRRQNLGLLSPYPVIDEDLQLFLLQGGLQNMDFPPEYFDHHP GFVSEDAMSLYDAARFDYDPTEHLVIDQGLFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	0	1
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	1.7	0.9455
AT2G33580			Protein kinase superfamily pro...		Lus10019662 [exp]	2.0	0.9278
					Lus10034710 [exp]	2.4	0.9243
AT2G16385			unknown protein		Lus10017979 [exp]	2.8	0.9372
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10036006 [exp]	5.5	0.9108
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	7.2	0.9009
					Lus10033739 [exp]	9.7	0.8803
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	11.2	0.9185
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10015367 [exp]	11.9	0.8923
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	13.7	0.9008

Compare expression of checked genes

Lus10006446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.