Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 119 / 4e-35 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 107 / 1e-31 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 105 / 6e-30 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 105 / 7e-30 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT1G22640 100 / 7e-28 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G12720 100 / 3e-27 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G13890 100 / 4e-27 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G35550 99 / 6e-27 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT5G16770 100 / 7e-27 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G40330 97 / 1e-26 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003277 [exp] 153 / 3e-48 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10042522 [exp] 150 / 5e-47 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10009130 [exp] 131 / 4e-39 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028513 [exp] 128 / 4e-38 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10028514 [exp] 120 / 3e-35 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 120 / 4e-35 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10000470 [exp] 108 / 3e-30 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 106 / 1e-29 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000008 [exp] 100 / 1e-29 AT5G49330 142 / 5e-43 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 127 / 6e-38 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125600 [exp] 126 / 1e-37 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125900 [exp] 122 / 3e-36 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G125800 [exp] 122 / 5e-36 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 114 / 1e-32 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.003G079100 [exp] 100 / 1e-28 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.006G221800 [exp] 102 / 2e-28 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.019G050900 [exp] 103 / 3e-28 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.006G221500 [exp] 102 / 4e-28 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.001G197000 [exp] 103 / 5e-28 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006541 pacid=23149213 polypeptide=Lus10006541 locus=Lus10006541.g ID=Lus10006541.BGIv1.0 annot-version=v1.0 ATGGGAGGAGTTGCCTGGACTGAAGAAGAAGATCACTTGCTCAGAAAATGCATCGAGCAGTACGGCGAAGGCAAATGGCACCGTGTCCCCTTGCTTGCTG GTCTAAATAGGTGCCGTAAGAGCTGCAGGCTGAGGTGGCTGAACTACCTGCGGCCGAATATAAGGAGGGGGAGTTTCGAGGATGAGGAAGTTGAACTCAT CATTAAGCTTCATAAACTGTTGGGTAACAGGCAAGTTTAA
AA sequence Show only first row Show all	>Lus10006541 pacid=23149213 polypeptide=Lus10006541 locus=Lus10006541.g ID=Lus10006541.BGIv1.0 annot-version=v1.0 MGGVAWTEEEDHLLRKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIRRGSFEDEEVELIIKLHKLLGNRQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10006541 [exp]	0	1

Compare expression of checked genes

Lus10006541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.