Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 158 / 4e-48 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 110 / 3e-29 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT1G06160 105 / 3e-27 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT4G17500 84 / 4e-19 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT4G18450 84 / 7e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 82 / 7e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47220 81 / 2e-18 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 78 / 6e-18 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23220 78 / 6e-18 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G43410 77 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014655 [exp] 308 / 1e-106 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10022015 [exp] 157 / 8e-48 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10021193 [exp] 142 / 1e-41 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10042557 [exp] 138 / 8e-41 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10011829 [exp] 137 / 1e-39 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10003562 [exp] 107 / 3e-28 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10027469 [exp] 105 / 8e-28 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10033885 [exp] 105 / 2e-27 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10022935 [exp] 97 / 1e-23 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G045200 [exp] 165 / 9e-51 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.019G014409 [exp] 156 / 3e-47 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223200 [exp] 143 / 3e-42 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 142 / 6e-42 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.008G166200 [exp] 136 / 1e-39 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.010G072300 [exp] 135 / 2e-39 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.005G223300 [exp] 121 / 1e-33 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 117 / 3e-32 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.011G061700 [exp] 91 / 1e-22 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 88 / 2e-21 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10006579 pacid=23149170 polypeptide=Lus10006579 locus=Lus10006579.g ID=Lus10006579.BGIv1.0 annot-version=v1.0 ATGAATCAACATGGTTACTTCAACTATCAGAACACATCCGAGTTCTCCTCTCAGCATTCCGACAATATCCTCCCTTTCAACGAGAATGACTCCGAAGAAA TGCTTCTTTACGGAGTCATCAACCAATCCACCTCCTCCTCTGCCTCCTCCTCCGTCGTTGGAATGTCCTCTTCTTCCTCTCCCTCCTCCTCGCAACTTTC CTCGCCCGACCACGAGGAAACTACATATAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTACGCTGCCGAGATAAGAGACTCGACCAGGAACGGGGTCCGA GTGTGGCTAGGAACGTTCGACACAGCGGAGGAAGCTGCCCTGGCCTACGACCAGGCAGCGTTCGCACTGCGAGGGTCGATGGCCGTGCTGAATTTTTCCA TAGAGACAGCTGTGAAGTCGTTACAAGAAATAGGGTACCGTTTCGAGGAAGGATCGTCGCCAGTGATGGCTTTAAAGAAGAGGCATTCGGCTAGGAGGAA GGCAGAGAACGGTAAGAAGAAGAAAGAGAAGGCGACGGCGGCGACGAATGATGGGGAAGGGATGGTGGTGTTAGAGGATTTGGGAGAGCAGTACTTGGAG GAAATTATGGAAATTTCGGAAAGAAGTAGTGATCATCATATGGCTAGTAGTAGTGCTACTATTAGCGACAGTTATGGAACTGTTGGTAGTGGTTACATTA ATCATGGCTACTACTGGTCAATGTAG
AA sequence Show only first row Show all	>Lus10006579 pacid=23149170 polypeptide=Lus10006579 locus=Lus10006579.g ID=Lus10006579.BGIv1.0 annot-version=v1.0 MNQHGYFNYQNTSEFSSQHSDNILPFNENDSEEMLLYGVINQSTSSSASSSVVGMSSSSSPSSSQLSSPDHEETTYRGVRKRPWGKYAAEIRDSTRNGVR VWLGTFDTAEEAALAYDQAAFALRGSMAVLNFSIETAVKSLQEIGYRFEEGSSPVMALKKRHSARRKAENGKKKKEKATAATNDGEGMVVLEDLGEQYLE EIMEISERSSDHHMASSSATISDSYGTVGSGYINHGYYWSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10006579 [exp]	0	1
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10009153 [exp]	29.2	0.7128
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	31.9	0.6626
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	35.7	0.7355
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	42.9	0.7072
AT1G65690			Late embryogenesis abundant (L...		Lus10033705 [exp]	53.7	0.6911
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041303 [exp]	54.4	0.6764
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10005766 [exp]	65.1	0.6903
AT4G25030			unknown protein		Lus10041415 [exp]	79.8	0.6888
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	101.1	0.6776
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	102.6	0.6753

Compare expression of checked genes

Lus10006579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.