Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51895 952 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 851 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT3G15990 701 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 696 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G19600 671 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT4G08620 660 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 641 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 641 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G10180 562 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 556 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039364 [exp] 1291 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10014706 [exp] 707 / 0 AT3G51895 804 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 677 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10041111 [exp] 671 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10035897 [exp] 668 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 666 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 664 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10029616 [exp] 664 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 661 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082700 [exp] 1049 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 1019 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 975 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 974 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.005G167300 [exp] 709 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.006G158900 [exp] 696 / 0 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.010G111700 [exp] 694 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.006G156038 [exp] 692 / 0 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.003G056200 [exp] 683 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 681 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10006612 pacid=23145329 polypeptide=Lus10006612 locus=Lus10006612.g ID=Lus10006612.BGIv1.0 annot-version=v1.0 ATGGGCACTACTACTGATTACGACCGGCGGCCGCACCGTGTGGCCATCCCGCCGGCAAAACCGTTTTTCCAGACTCTGAAATCAAGCCTGAAGGAAACCC TTTTCCCCGACGACCCCTTCAGGGACATCAAGAAGCAGCACACAGCTTCCAGGAAAATCGTTATGGCACTTCAGTATTTCATCCCCATCCTAGAGTGGGG CCCTCGCTACACTCTCGACTTCTTCAAGGCTGACCTCGTCGCCGGTATCACCATCGCTAGCTTGGCCGTCCCTCAGGGCATCAGCTACGCCGGCCTCGCT AGCCTCCCCGCCATTGTTGGACTCTACTCGAGTTTTGTGCCGCCACTGGTGTACGCGATGCTGGGGAGGTCGAGGGATGTGGCGGTTGGGACGGTGGCGG TGGCGTCGTTGCTGATGACAACGATGTTGGGGAAGGAATTTAGTCCGGTGGAGAAGCCTAAAGAATATTTCCAGTTAGCTATAACTGCCACCTTTGTCGC CGGCGTCTTGGAATCACTCCTTGGATTCCTCAGGCTTGGGTTTATCGTGGACTTCTTGTCGCATGCAACGATCGTGGGGTTCATGAGCGGAGCGGCTACG GTGGTATGTTTGCAACAACTAAAAGGAATACTTGGATTGGTTCACTTCACTCACGAGACCGATATAATTTCTGTTATGCATTCCATCTTTAGTCAAACAC ACCAGTGGAGATGGGAAAGTGGGATTCTAGGCTGTTGCTTTCTCTTCTTCCTCCTCCTCACTAAATACTTCAGCAAGAGAAAGTCTTACTTCTTTTGGAT AAACGCGATGGCGCCACTGACATCTGTTGTTCTTGGAAGTGTCCTTGTCTACCTCACCCATGCCGAGAAGCATGGCGTCCAAGTGATTGGGAACCTGAAG AAAGGACTGAATCCACTCTCTGTATCCGATTTGGCATTTGGGTCTCCCCATCTCATGGTAGCTGTTAAAACTGGCATCGTAACTGGAATTATTGCTCTTG CTGAGGGAGTAGCAGTTGGGAGGAGCTTTGCCCAGTTCAAGAACTACCATATTGATGGCAACAAAGAAATGATTGCTTTTGGTACCATGAACATTGTTGG CTCCCTCACTTCTTGCTATCTAACCTCAGGTCCATTTTCGCGAACGGCGGTGAACTTCAATGCCGGATGCAAGACAGCAGTTTCGAACATAGTAATGGCA GTAGCAGTGATGATGACTCTTCTGTTCCTTACGCCGCTCTTCCACTACACTCCCATGGTGGTGCTGTCAGCTATCATCATTGCGGCCATGCTCGGCCTGA TAGATTATGAGGCGGCATTCCACCTTTGGAAAGTCGACAAGTACGATTTTTCTGTATGCCTTGGTGCTTACATTGGTGTGGTTTTTGGCAGCGTGGAGAT TGGCCTTGTCATTGCTGTTGCGATTTCTCTAGTAAGGCTTCTTCTGTTTCTAGCAAGGCCAAAGACTTCATTACTTGGCAATATTCCAAACTCCATGATT TACAGAAGCATGGATCAATACCCCAATGCCGATGGTGTTCCCGGACTGCTCATTCTTCAGATTGAAGCGCCTATCTACTTTGCCAATGCCAATTACTTGA GAGAAAGGATTTCAAGATGGATTTATGAAGAGGAAGACAAGCTGAAATCTGCAGGAGGACCCAGTTTACAGTTCGTCATACTTGACATGACCTCAATTGG TAACATAGACACAAGTGGGATAAGCATGCTGGAAGAAGTGAAGAAGAACACAGACAGAAAAGAGTTGAAGCTGCTACTGGCAAACCCACGGAGCGAGGTT ATTAAGAAGCTAGACAAGTCCAAATTCATAAAAAGCATTGGTCAAGAATGGATATACCTGACCGTGGCAGAAGCTGTGGCAGCTTGCAACTTCATGCTAC ACACATGCAACCCCAAACATGTTACTACCGAATCCAATGGACAAGACAACAATGTCTGA
AA sequence Show only first row Show all	>Lus10006612 pacid=23145329 polypeptide=Lus10006612 locus=Lus10006612.g ID=Lus10006612.BGIv1.0 annot-version=v1.0 MGTTTDYDRRPHRVAIPPAKPFFQTLKSSLKETLFPDDPFRDIKKQHTASRKIVMALQYFIPILEWGPRYTLDFFKADLVAGITIASLAVPQGISYAGLA SLPAIVGLYSSFVPPLVYAMLGRSRDVAVGTVAVASLLMTTMLGKEFSPVEKPKEYFQLAITATFVAGVLESLLGFLRLGFIVDFLSHATIVGFMSGAAT VVCLQQLKGILGLVHFTHETDIISVMHSIFSQTHQWRWESGILGCCFLFFLLLTKYFSKRKSYFFWINAMAPLTSVVLGSVLVYLTHAEKHGVQVIGNLK KGLNPLSVSDLAFGSPHLMVAVKTGIVTGIIALAEGVAVGRSFAQFKNYHIDGNKEMIAFGTMNIVGSLTSCYLTSGPFSRTAVNFNAGCKTAVSNIVMA VAVMMTLLFLTPLFHYTPMVVLSAIIIAAMLGLIDYEAAFHLWKVDKYDFSVCLGAYIGVVFGSVEIGLVIAVAISLVRLLLFLARPKTSLLGNIPNSMI YRSMDQYPNADGVPGLLILQIEAPIYFANANYLRERISRWIYEEEDKLKSAGGPSLQFVILDMTSIGNIDTSGISMLEEVKKNTDRKELKLLLANPRSEV IKKLDKSKFIKSIGQEWIYLTVAEAVAACNFMLHTCNPKHVTTESNGQDNNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	1.0	0.9726
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	2.0	0.9343
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	3.5	0.9010
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	6.5	0.9154
AT1G75580			SAUR-like auxin-responsive pro...		Lus10034511 [exp]	6.5	0.8664
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	7.5	0.8580
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	8.5	0.8687
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	8.9	0.9073
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	11.2	0.8991
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10035693 [exp]	14.4	0.9103

Compare expression of checked genes

Lus10006612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.