Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52600 186 / 8e-59 MYB AtMYB82 myb domain protein 82 (.1) AT5G40330 147 / 2e-43 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G14750 143 / 3e-42 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G35550 144 / 5e-42 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT3G27920 141 / 4e-41 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT3G13540 136 / 6e-39 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT1G22640 135 / 2e-38 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G38620 135 / 3e-38 MYB AtMYB4 myb domain protein 4 (.1) AT5G54230 134 / 1e-37 MYB ATMYB49 myb domain protein 49 (.1) AT5G12870 131 / 7e-37 MYB ATMYB46 myb domain protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038092 [exp] 456 / 1e-164 AT5G52600 185 / 1e-58 myb domain protein 82 (.1) Lus10000470 [exp] 142 / 1e-40 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 141 / 2e-40 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10039173 [exp] 139 / 7e-40 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 136 / 1e-38 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10000411 [exp] 132 / 4e-37 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10009448 [exp] 131 / 7e-37 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10006740 [exp] 134 / 1e-36 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10028514 [exp] 131 / 1e-36 AT1G66370 179 / 1e-55 myb domain protein 113 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127700 [exp] 210 / 3e-68 AT5G52600 201 / 2e-65 myb domain protein 82 (.1) Potri.006G066400 [exp] 198 / 2e-63 AT5G52600 193 / 3e-62 myb domain protein 82 (.1) Potri.003G079100 [exp] 144 / 5e-43 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.001G005100 [exp] 147 / 2e-42 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.006G221200 [exp] 143 / 3e-42 AT3G13540 169 / 6e-53 myb domain protein 5 (.1) Potri.006G221500 [exp] 144 / 6e-42 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.001G169600 [exp] 142 / 7e-42 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.002G173900 [exp] 144 / 2e-41 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.003G064600 [exp] 141 / 2e-41 AT5G14750 166 / 5e-52 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.015G075600 [exp] 141 / 2e-41 AT5G14750 189 / 6e-61 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006647 pacid=23158641 polypeptide=Lus10006647 locus=Lus10006647.g ID=Lus10006647.BGIv1.0 annot-version=v1.0 ATGGATGATGATACTCAACAAGTGAAAAAGAGAGGGTTGTGGAAGCCTGAGGAAGACCTCATCCTCAGAATGTACGTTCAAACTCACGGTGAAGGCAACT GGGCTACTGTTTCTGCTAAATCAGGCTTGTTTTTCTTCTTCTTCGTCTTCTTCTTCTTTGCCTCCCCACCTGGACTGGGCTACCTCTTCTCTCTTTGCTA CTCGTACACTAAGGCTGGTTTTGCAGGTTTGAAGAGAGGCGGTAAGAGCTGCAGACTTAGGTGGAAGAATTACTTGAGACCAAACATCAAACGAGGCGAC ATGTCAGACCAGGAACAAGACCTCATTATCCGAATGCACAAGCTTGTCGGAAATCGGTGGTCTCTTATCGCTGGCCGGCTTCCAGGCCGCACCGATAACG AAGTGAAGAACTACTGGAACACCCATTTAAACAATAAGAGGCTAAGCCGAGTCAGCAAGAGACCAAAGACGATGAACTCTAATAAGAATCACAGACGCAG CTCCAAGGACGAAAAACCTCATCAAGATCCCCAGCTGGTAAGCGGTATAAAGCCAGTTGTTACCATAGGAGAAGACAACCAAACTACAGCTACTGATGAT GCGTGGATTGAAGCTGCACAGAACATGAACAGCTACTACATTGAGTCTCCAATGCCGGCGGCAGCGAGGGATACCGCCTTGATGCTAGACACTAATGAGC CTTTCATTCCTTATTTGGATCCCTTCCTTTTTTTTCCTCAGCCATTCGAATGCTTCATCGGGGACGGAGACGCATTCTTTCAATAA
AA sequence Show only first row Show all	>Lus10006647 pacid=23158641 polypeptide=Lus10006647 locus=Lus10006647.g ID=Lus10006647.BGIv1.0 annot-version=v1.0 MDDDTQQVKKRGLWKPEEDLILRMYVQTHGEGNWATVSAKSGLFFFFFVFFFFASPPGLGYLFSLCYSYTKAGFAGLKRGGKSCRLRWKNYLRPNIKRGD MSDQEQDLIIRMHKLVGNRWSLIAGRLPGRTDNEVKNYWNTHLNNKRLSRVSKRPKTMNSNKNHRRSSKDEKPHQDPQLVSGIKPVVTIGEDNQTTATDD AWIEAAQNMNSYYIESPMPAAARDTALMLDTNEPFIPYLDPFLFFPQPFECFIGDGDAFFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	0	1
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	1.0	0.9434
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001090 [exp]	2.2	0.9006
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	2.8	0.9200
AT5G62550			unknown protein		Lus10023614 [exp]	3.7	0.8992
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	5.2	0.9116
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	5.3	0.9036
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10026010 [exp]	5.5	0.8995
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	6.2	0.8811
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	7.5	0.8896
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	8.5	0.8894

Compare expression of checked genes

Lus10006647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.