Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26330 93 / 4e-24 Cupredoxin superfamily protein (.1) AT3G17675 89 / 2e-23 Cupredoxin superfamily protein (.1) AT2G26720 86 / 3e-21 Cupredoxin superfamily protein (.1) AT2G31050 84 / 2e-20 Cupredoxin superfamily protein (.1) AT2G32300 84 / 5e-20 UCC1 uclacyanin 1 (.1) AT2G02850 79 / 3e-19 ARPN plantacyanin (.1) AT4G12880 77 / 3e-18 AtENODL19 early nodulin-like protein 19 (.1.2) AT5G20230 75 / 5e-17 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT5G15350 71 / 8e-16 AtENODL17 early nodulin-like protein 17 (.1) AT5G53870 74 / 1e-15 AtENODL1 early nodulin-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007025 [exp] 225 / 4e-76 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10007027 [exp] 194 / 7e-64 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 184 / 6e-60 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10006682 [exp] 182 / 3e-59 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10007028 [exp] 179 / 4e-58 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10006683 [exp] 132 / 9e-40 AT5G26330 88 / 1e-22 Cupredoxin superfamily protein (.1) Lus10006681 [exp] 122 / 5e-36 AT2G32300 59 / 2e-12 uclacyanin 1 (.1) Lus10002615 [exp] 105 / 2e-29 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1) Lus10002617 [exp] 105 / 5e-28 AT3G53330 105 / 1e-26 plastocyanin-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061300 [exp] 110 / 2e-31 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 107 / 6e-30 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 107 / 7e-30 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 107 / 8e-30 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 96 / 3e-25 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 95 / 5e-25 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 95 / 7e-25 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 91 / 1e-23 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 91 / 1e-23 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 89 / 1e-22 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10006680 pacid=23152192 polypeptide=Lus10006680 locus=Lus10006680.g ID=Lus10006680.BGIv1.0 annot-version=v1.0 ATGGCCTTGGCTAGCAACAAGATGACAGTGGTCTTGATGGTTGCGGTGGTTGTTGCGGTGGCAGCTGCTTTCGTTCCGACAACCTCGGCCGAGAAATACG TGGTCGGGGATGGTGGTGGGTGGACCAACAAGGGCGTCGATTACAAAGCTTGGGCTGAGGGCAAAACGTTCTACGTTGGCGATTCCCTTGTTTTCAACTA CGCTTCCGGAAACCACAACGTGATGAAGGTGAACGCGTCGGACTTCCTGGCGTGCACAAAGCCTCTTACCGGACCTCCTCCACTGACCTCGGGAGCTGAT GAGGTTACGCTCCTAACAACTGGAAAGAAGTGGTACATTTGCGGCGCTACTGGCCACTGTGCTGCCGGTCAAAAGCTCGTGATCGCCGTTTCTGAGGGAG CTGCGCCGGCACCAACACCCAACTCACCGCCCAACGCCGCCGTTGGAGGGATCGTCGGTATCGGATTTGCTGCCTCCATGATTGTTGGGGTTATTGGGAT GGTCTTGTTCTGA
AA sequence Show only first row Show all	>Lus10006680 pacid=23152192 polypeptide=Lus10006680 locus=Lus10006680.g ID=Lus10006680.BGIv1.0 annot-version=v1.0 MALASNKMTVVLMVAVVVAVAAAFVPTTSAEKYVVGDGGGWTNKGVDYKAWAEGKTFYVGDSLVFNYASGNHNVMKVNASDFLACTKPLTGPPPLTSGAD EVTLLTTGKKWYICGATGHCAAGQKLVIAVSEGAAPAPTPNSPPNAAVGGIVGIGFAASMIVGVIGMVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	0	1
					Lus10002449 [exp]	2.0	1.0000
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001671 [exp]	2.4	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	3.0	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	3.5	1.0000
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10028107 [exp]	4.2	1.0000
AT1G14220			Ribonuclease T2 family protein...		Lus10015409 [exp]	4.4	1.0000
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	4.5	1.0000
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10028665 [exp]	4.6	1.0000
AT1G45191		BGLU1	beta glucosidase 1, Glycosyl h...		Lus10030372 [exp]	4.7	1.0000
AT1G76250			unknown protein		Lus10008273 [exp]	5.4	1.0000

Compare expression of checked genes

Lus10006680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.