Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02850 85 / 2e-21 ARPN plantacyanin (.1) AT3G17675 84 / 2e-21 Cupredoxin superfamily protein (.1) AT5G26330 84 / 1e-20 Cupredoxin superfamily protein (.1) AT2G26720 81 / 3e-19 Cupredoxin superfamily protein (.1) AT2G32300 80 / 1e-18 UCC1 uclacyanin 1 (.1) AT2G31050 79 / 2e-18 Cupredoxin superfamily protein (.1) AT3G60270 74 / 1e-16 Cupredoxin superfamily protein (.1) AT1G72230 72 / 4e-16 Cupredoxin superfamily protein (.1) AT5G07475 72 / 5e-16 Cupredoxin superfamily protein (.1) AT4G12880 69 / 2e-15 AtENODL19 early nodulin-like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007025 [exp] 142 / 1e-43 AT2G32300 101 / 3e-27 uclacyanin 1 (.1) Lus10007027 [exp] 142 / 2e-43 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10006682 [exp] 139 / 2e-42 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10007026 [exp] 137 / 9e-42 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10006680 [exp] 135 / 5e-41 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1) Lus10007028 [exp] 135 / 1e-40 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10006681 [exp] 96 / 6e-26 AT2G32300 59 / 2e-12 uclacyanin 1 (.1) Lus10020276 [exp] 99 / 8e-25 AT1G45063 116 / 9e-30 copper ion binding;electron carriers (.1.2) Lus10002617 [exp] 97 / 2e-24 AT3G53330 105 / 1e-26 plastocyanin-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030450 [exp] 112 / 5e-32 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 112 / 1e-31 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 109 / 7e-31 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 103 / 1e-28 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 90 / 3e-23 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 89 / 1e-22 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 87 / 5e-22 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 87 / 2e-21 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 85 / 4e-21 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 84 / 9e-21 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10006683 pacid=23152173 polypeptide=Lus10006683 locus=Lus10006683.g ID=Lus10006683.BGIv1.0 annot-version=v1.0 ATGGCGAGGATAATGGTGGGAGTGATGATGGCAGTGGCGGCAGTTGCAGGTTTGGTCCCGGCAACTTTGGGAAAGCAGTACGTGGTCGGGGACGACAGTG GCTGGACCGCCACCGGTGTCGATTACGAGGCTTGGGCTAAGGGCAAACACTTCGCCGTCGTTTTCAACTATCATCCAGGAAGCCACAACGTGATGATAGT GAACGAGACGAACTACGAGGACTGCACAAGGCCTCTAACTGGCCAGCCACTCATCTCCGGTAAAGACGAGGTAAAGCTCTCGACTCCAGGCAAGAAATTT TACATCTGCGGCGCCCCTGGCCACTGTGCAGCCGGTCAGAAGCTGGCCATCACTGTCTCCGACGTAGCTGCCTCACCCTCGACCGAGGCATCAACTCCTA AATCCTCTGCACCAGCAATGGGAGGCATCGTTGTTACTCGCGTCGGATTCGTGGTTGTTAGCACTGTTGTTGGGATGACGGTACTGTTCCGAAAGATAAG AATTTCGTTTTAG
AA sequence Show only first row Show all	>Lus10006683 pacid=23152173 polypeptide=Lus10006683 locus=Lus10006683.g ID=Lus10006683.BGIv1.0 annot-version=v1.0 MARIMVGVMMAVAAVAGLVPATLGKQYVVGDDSGWTATGVDYEAWAKGKHFAVVFNYHPGSHNVMIVNETNYEDCTRPLTGQPLISGKDEVKLSTPGKKF YICGAPGHCAAGQKLAITVSDVAASPSTEASTPKSSAPAMGGIVVTRVGFVVVSTVVGMTVLFRKIRISF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	0	1
AT3G05610			Plant invertase/pectin methyle...		Lus10033466 [exp]	1.4	0.9659
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	1.7	0.9793
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	4.9	0.9173
					Lus10006761 [exp]	5.5	0.9229
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	5.5	0.9328
AT4G19950			unknown protein		Lus10017130 [exp]	5.8	0.8192
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	6.3	0.9254
AT4G15620			Uncharacterised protein family...		Lus10035168 [exp]	7.7	0.8542
AT5G37360			unknown protein		Lus10003097 [exp]	8.0	0.8397
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	8.9	0.9067

Compare expression of checked genes

Lus10006683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.