Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12500 382 / 1e-133 Nucleotide-sugar transporter family protein (.1) AT5G05820 295 / 3e-100 Nucleotide-sugar transporter family protein (.1) AT3G11320 295 / 4e-100 Nucleotide-sugar transporter family protein (.1) AT5G04160 288 / 1e-97 Nucleotide-sugar transporter family protein (.1) AT3G10290 282 / 1e-94 Nucleotide-sugar transporter family protein (.1) AT1G77610 127 / 1e-34 EamA-like transporter family protein (.1) AT1G21870 125 / 9e-34 GONST5 golgi nucleotide sugar transporter 5 (.1) AT3G14410 81 / 2e-17 Nucleotide/sugar transporter family protein (.1) AT4G32390 78 / 2e-16 Nucleotide-sugar transporter family protein (.1) AT1G53660 77 / 3e-16 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007029 [exp] 445 / 3e-159 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 305 / 5e-104 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 301 / 1e-102 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 288 / 2e-97 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 287 / 7e-97 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 284 / 2e-95 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 268 / 1e-89 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 268 / 3e-89 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 131 / 5e-36 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118000 [exp] 443 / 1e-157 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 434 / 3e-154 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 298 / 3e-101 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 295 / 3e-100 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 292 / 5e-99 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 284 / 4e-96 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 280 / 2e-94 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 278 / 1e-93 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.001G289900 [exp] 123 / 1e-35 AT1G12500 149 / 3e-45 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 127 / 2e-34 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10006684 pacid=23152208 polypeptide=Lus10006684 locus=Lus10006684.g ID=Lus10006684.BGIv1.0 annot-version=v1.0 ATGCTCCACATGATCTCCTGCGCCATCTACAGCTACGTCTCAATCAAGTTCCTCGAGGTAGTCCCTGTCCAGCACATCCTCTCTAGAAAACAGTTCTTCA AGATCTTCGCTCTATCAGCGATCTTCTGTTTTTCAGTTGTCTGTGGCAATACTTCGCTTCGGTACCTTCCGGTGTCTTTCAATCAAGCGATCGGAGCTAC GACGCCGTTTTTCACTGCGATTTTTGCCTTTTTGATTACTTGTAAGAAGGAATCGGCGGAGGTTTATGGTGCGTTGATGCCGGTGGTGTTTGGGATTGTT TTGGCGAGTAATAGCGAGCCTCTGTTTCATCTGTTCGGGTTTCTGGTATGCGTCGGGTCGACTGCGGGTCGGGCGTTGAAATCTGTTGTACAGGGGATTA TATTGACCTCCGAGGCGGAGAAGCTTCACTCGATGAATCTGTTGCTCTACATGGCGCCGATGGCGGCAATGATTCTGCTGCCGTTAACGCTCTACATCGA AGGGAATGTAGCGGCAGTGACTCTGGAGAAGGCGAAAGGAGATCCGTACATCGTCTTCTTGCTGATTGGGAACGCGACGGTGGCGTATCTGGTGAACTTG ACGAATTTCCTGGTGACGAAGCACACTAGTGCTCTGACGCTGCAGGTCCTGGGGAACGCTAAGGCGGCGGTGGCGGCGGTGGTTTCGGTGCTGATATTCA GGAATCCGGTGACGGTGATGGGGATGGCGGGATTCGCCGTTACGATCATGGGCGTTGTGCTTTACAGCGAGGCCAGGAAGAGATCTAAGGTCACGATGCA TTGA
AA sequence Show only first row Show all	>Lus10006684 pacid=23152208 polypeptide=Lus10006684 locus=Lus10006684.g ID=Lus10006684.BGIv1.0 annot-version=v1.0 MLHMISCAIYSYVSIKFLEVVPVQHILSRKQFFKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYGALMPVVFGIV LASNSEPLFHLFGFLVCVGSTAGRALKSVVQGIILTSEAEKLHSMNLLLYMAPMAAMILLPLTLYIEGNVAAVTLEKAKGDPYIVFLLIGNATVAYLVNL TNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFAVTIMGVVLYSEARKRSKVTMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12500			Nucleotide-sugar transporter f...		Lus10006684 [exp]	0	1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	5.3	0.8936
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	7.4	0.8963
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10003201 [exp]	7.7	0.9007
AT2G44600			unknown protein		Lus10019505 [exp]	8.1	0.8841
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	10.2	0.9068
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	11.8	0.9148
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	15.1	0.8974
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	16.7	0.8874
AT4G33640			unknown protein		Lus10007087 [exp]	20.6	0.8744
AT5G67020			unknown protein		Lus10019345 [exp]	21.9	0.8842

Compare expression of checked genes

Lus10006684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.