Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55310 104 / 2e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 103 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G63380 102 / 4e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55290 102 / 1e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 100 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 95 / 1e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G10020 46 / 7e-07 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G47350 44 / 6e-06 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 42 / 3e-05 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50690 39 / 0.0002 ATHSD7 hydroxysteroid dehydrogenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007038 [exp] 167 / 6e-53 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007039 [exp] 147 / 6e-45 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 135 / 1e-40 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006699 [exp] 124 / 3e-36 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006178 [exp] 41 / 6e-05 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10041045 [exp] 41 / 7e-05 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10013594 [exp] 40 / 8e-05 AT3G51680 114 / 2e-31 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009467 [exp] 39 / 0.0004 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 39 / 0.0004 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035200 [exp] 120 / 8e-35 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G048800 [exp] 43 / 8e-06 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 43 / 1e-05 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.019G073200 [exp] 41 / 6e-05 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.012G101900 [exp] 38 / 0.0006 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 37 / 0.0007 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.013G100200 [exp] 37 / 0.0007 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006695 pacid=23152225 polypeptide=Lus10006695 locus=Lus10006695.g ID=Lus10006695.BGIv1.0 annot-version=v1.0 ATGGCTAACAAGGTGTCAGCCCAGCTGGAGCCATGGTGCAACTTACCAGACAAGGTGGTCCTTGTAACCGGTGCTGCTTCAAGTTCAGGCCGAGAATTTG CCCTCGATCTAGCGAAAGCTGGATGCCGGATCGTGGCTGCTGCTAGGCGTATTGACCGCCTACAATCTCTCTGCAACGAGATCAATACTCTCCAGTTTCC GACTAGTGCTTCTTCATCTGCCGGAGAGCCAAGTGGTCCACTTGCAGTAGCCGTGGAGCTAGATGTGTCACCAGACGGGGCTGCAATTGATAAGTCGATA CAGAGCCCTGGGAAGCCTTTGGAAGAATAG
AA sequence Show only first row Show all	>Lus10006695 pacid=23152225 polypeptide=Lus10006695 locus=Lus10006695.g ID=Lus10006695.BGIv1.0 annot-version=v1.0 MANKVSAQLEPWCNLPDKVVLVTGAASSSGREFALDLAKAGCRIVAAARRIDRLQSLCNEINTLQFPTSASSSAGEPSGPLAVAVELDVSPDGAAIDKSI QSPGKPLEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55310			NAD(P)-binding Rossmann-fold s...		Lus10006695 [exp]	0	1
					Lus10008694 [exp]	5.5	0.8273
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10028320 [exp]	9.8	0.7857
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10022025 [exp]	16.9	0.8424
AT5G66390			Peroxidase superfamily protein...		Lus10041784 [exp]	20.2	0.8064
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10032257 [exp]	25.9	0.7523
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	28.9	0.7690
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	33.0	0.8071
					Lus10008695 [exp]	33.9	0.7817
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	37.9	0.8102
AT1G55270			Galactose oxidase/kelch repeat...		Lus10030072 [exp]	41.0	0.8010

Compare expression of checked genes

Lus10006695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.