Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63380 353 / 3e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 352 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G55290 345 / 2e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 343 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 340 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 338 / 3e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G01980 117 / 3e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G24360 103 / 1e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 88 / 3e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 85 / 4e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007039 [exp] 457 / 5e-164 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006699 [exp] 427 / 3e-152 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007038 [exp] 417 / 2e-148 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006695 [exp] 160 / 1e-49 AT3G55310 107 / 9e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 110 / 3e-28 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 103 / 1e-24 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012548 [exp] 100 / 1e-24 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10041545 [exp] 96 / 3e-23 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10022756 [exp] 90 / 1e-20 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035200 [exp] 395 / 8e-140 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G056100 [exp] 118 / 4e-31 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 114 / 1e-29 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 102 / 2e-25 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G067332 [exp] 99 / 4e-24 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.005G106100 [exp] 96 / 3e-23 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 96 / 4e-23 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 92 / 1e-21 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 90 / 7e-21 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 89 / 9e-21 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006698 pacid=23152215 polypeptide=Lus10006698 locus=Lus10006698.g ID=Lus10006698.BGIv1.0 annot-version=v1.0 ATGGCCAGTGAGGTGTCAGCCCAGCTGGAGCCATGGTGCAACTTACCAGACAAAGTGGTCCTTGTAACCGGTGCTTCTTCGGGTTTAGGCCGAGAGTTCT GCCTCGATCTAGCCAAGGCTGGGTGCAAGATCGTTGCAGCTGCTAGGCGCATTGACCGCCTACAATCTTTGTGCAACGAAATCAATCAGCTAACTGCTTC ATCATCTGCGGGAGAGCCAATTGGTCCACGTGCTATGGCTGTGGAACTGGATGTGTCAGCAGACGGGCCTGCTATTGATAAGGCTGTACAGAGGTCTTGG GAAGCCTTTGGAAGGATAGATGTGTTGATCAACAATGCTGGCATTAGCGGTAGCACGAAGAACTCGTTGATTTTATCTGAAGAGGAATGGAATCAAGTGA TCAAGACGAACTTGACAGGAACCTGGTTGGTTTCTAAGTCAGCTGGGATACGGATGCGCGATGCAAAGCTGGGAGGTTCCATAATCAATATTTCGTCGAT CTCTGGTCTTAGTCGTGGTTATACACCTGGAGTTGTCGCTTATGCTTCTTCGAAGACCGGTGTAAATTCCATGACAAAGGTGATGGCGCTGGAGTTGGGC GCTTACAATATCAGAGTTAACTCTATATCGCCCGGACTGTTCAAATCCGAGATCACCAAAGGTCTCATCCAAAAGCCTTGGCTGACTACCATTGCTGAGA AGACGATCCCTCTACGAACATTTGGAACTGTAGACCCAGCATTGACATCACTCGTTCGATACCTCATCTATGATTCAACCCGGTATGTGACGGGCAATGT GTTCATTGTTGATGCCGGAACTACCGTACCAGGTGTCCCCATTTTCTCATCGCTCTGA
AA sequence Show only first row Show all	>Lus10006698 pacid=23152215 polypeptide=Lus10006698 locus=Lus10006698.g ID=Lus10006698.BGIv1.0 annot-version=v1.0 MASEVSAQLEPWCNLPDKVVLVTGASSGLGREFCLDLAKAGCKIVAAARRIDRLQSLCNEINQLTASSSAGEPIGPRAMAVELDVSADGPAIDKAVQRSW EAFGRIDVLINNAGISGSTKNSLILSEEEWNQVIKTNLTGTWLVSKSAGIRMRDAKLGGSIINISSISGLSRGYTPGVVAYASSKTGVNSMTKVMALELG AYNIRVNSISPGLFKSEITKGLIQKPWLTTIAEKTIPLRTFGTVDPALTSLVRYLIYDSTRYVTGNVFIVDAGTTVPGVPIFSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	0	1
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	2.8	0.9225
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	6.9	0.9258
AT2G45320			unknown protein		Lus10000786 [exp]	7.5	0.9079
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	7.9	0.9099
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	9.0	0.9140
					Lus10001241 [exp]	10.0	0.9052
AT1G77680			Ribonuclease II/R family prote...		Lus10009880 [exp]	10.8	0.8627
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	11.5	0.9115
AT5G63620			GroES-like zinc-binding alcoho...		Lus10029549 [exp]	12.6	0.8714
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	13.3	0.9126

Compare expression of checked genes

Lus10006698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.