Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46170 379 / 3e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 377 / 1e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 368 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G55310 365 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 363 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G17845 353 / 4e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G01980 127 / 6e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G24360 102 / 3e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 86 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 85 / 3e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006698 [exp] 434 / 4e-155 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007039 [exp] 432 / 4e-154 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007038 [exp] 400 / 6e-142 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006695 [exp] 139 / 2e-41 AT3G55310 107 / 9e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012548 [exp] 108 / 6e-28 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10036980 [exp] 108 / 2e-27 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041545 [exp] 100 / 5e-25 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10015821 [exp] 102 / 2e-24 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 85 / 4e-19 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035200 [exp] 417 / 1e-148 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G067332 [exp] 113 / 1e-29 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.010G056100 [exp] 113 / 4e-29 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 112 / 1e-28 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 106 / 5e-27 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G327800 [exp] 103 / 6e-26 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.004G199900 [exp] 101 / 3e-25 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 100 / 5e-25 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 95 / 1e-22 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 91 / 3e-21 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006699 pacid=23152220 polypeptide=Lus10006699 locus=Lus10006699.g ID=Lus10006699.BGIv1.0 annot-version=v1.0 ATGGCTAGCGAGGTGTCAGCCCAGCTGGAGCCATGGTATAACTTGGAAGACAAAGTGGTCTTTGTAACTGGTGCTTCTTCAGGTTTGGGCAGAGATTTCT GCCTCGACCTGGCGAAAGCTGGGTGCAAGATTGTGGCTGCTGCTAGGCGTATTGACCGCCTACAATCTTTGTGCGATGAAATCAATCTGACTGCTGGAGA GCCAAGTGGTTTACGTGCTGCCGCTGTGGAGCTGGATGTGTCGGCAGACGGTGCTTCGATCGACAAGGCTGTACAGACCGCTTGGGAAGCCTTTGGAAAG ATAGATGCGTTGATCAACAATGCTGGAGTTAGAGGTAGTGTGAAGACCCCATTGGATTTTTCTGAAGAAGAGTGGAATCACACGATCAAGACGAATCTGA CAGGAGTTTGGTTGGTTTCCAAGTCAGTTGGGATTCGGATGCGTGATGCGAAGCTGGGAGGTTCCATAATCAATATTTCATCGATAGCTGGTCTGAATCG TGGTCTATTACCTGGAGCTGTTGGCTATGCTTCTTCGAAGACTGGAGTAAACGCCATGACAAAGGTGATGGCACTGGAGTTGGGGGTTCACAAGATCAGA GTTAACTCTATATCACCTGGACTTTTCAAATCTGAGATCACGCAAGGTCTTATGCAGAAAGACTGGCTCAGTAACGTTGCTGAGAAGACGGTTCCTCTAC TAACATATGGAACTGCAGACCCAGCATTGACATCAATCGCCCGATACCTCATCCACGATTCATCCCAGTATGTGACGGGTAATATCTTCATTGTGGACGC TGGAGCCACCTTACCTGGTGTCCCTATTTTCTCATCGCTCTGA
AA sequence Show only first row Show all	>Lus10006699 pacid=23152220 polypeptide=Lus10006699 locus=Lus10006699.g ID=Lus10006699.BGIv1.0 annot-version=v1.0 MASEVSAQLEPWYNLEDKVVFVTGASSGLGRDFCLDLAKAGCKIVAAARRIDRLQSLCDEINLTAGEPSGLRAAAVELDVSADGASIDKAVQTAWEAFGK IDALINNAGVRGSVKTPLDFSEEEWNHTIKTNLTGVWLVSKSVGIRMRDAKLGGSIINISSIAGLNRGLLPGAVGYASSKTGVNAMTKVMALELGVHKIR VNSISPGLFKSEITQGLMQKDWLSNVAEKTVPLLTYGTADPALTSIARYLIHDSSQYVTGNIFIVDAGATLPGVPIFSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006699 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	5.3	0.8561
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	5.3	0.8644
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	5.7	0.8610
AT1G02070			unknown protein		Lus10015899 [exp]	8.5	0.8360
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	10.1	0.8658
AT1G03250			unknown protein		Lus10012370 [exp]	14.7	0.8469
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	19.0	0.8217
AT3G07760			Sterile alpha motif (SAM) doma...		Lus10001743 [exp]	19.1	0.8135
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	20.8	0.8433
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	20.8	0.8045

Compare expression of checked genes

Lus10006699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.