Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11170 323 / 6e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 322 / 7e-95 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 316 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 318 / 5e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46260 313 / 1e-91 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 303 / 3e-88 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G49140 300 / 6e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 301 / 2e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 301 / 2e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41540 297 / 8e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006789 [exp] 1122 / 0 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005813 [exp] 1061 / 0 AT3G44480 297 / 2e-84 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 827 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 786 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 698 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 649 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 602 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 602 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 595 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069500 [exp] 408 / 1e-124 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 392 / 4e-121 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 392 / 6e-120 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 385 / 8e-118 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 371 / 3e-115 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 374 / 4e-113 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 365 / 5e-111 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 369 / 3e-110 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 358 / 9e-107 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 361 / 1e-106 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10006732 pacid=23163533 polypeptide=Lus10006732 locus=Lus10006732.g ID=Lus10006732.BGIv1.0 annot-version=v1.0 ATGGCGTGCTACACCGGGAAATGGGAGTACGATGTGTTCGTGTGTTTCAGAGGCAAAGACACCCGCCGTCTCTTCACCAGCCACCTCGCCGAACAACTAC GCCAACGATCGATTCGAACTTTTACAGACGAGATATTCGACCGAACAGAGGAAATTGACGCGGGCCTCCTCGACCTCCTCGAGAGATCGGCCATGTCAGT AGTGATATTTTCCGAGAGCTTCGCGGAGTCTAGCTACTGCCTGGATGAGGTGGCCGCCATCGCCCAGAGCGTGGAAAGATTCGGTCATCGGGTTCTGCCC GTTTTCTACGGGGTGGATCCGGATGATGTCGCCGGCGGTGTGATTGTGGCGGAGCTTAATGGTAGCGTGGAGAAGAAGAAAAGATGGATGGATGGTTTGA AGGAAGTGAGCAAACTTGCTGGCCGTACCTCTAAAGAGTTCAAGGATGATTGTGAAATGTGCAAGAAGATCGTGGACGACGTGCTAAAAGCATTAAGTGA CATGTGTTCAAAGCGAAAACCTAACAACTTGGTTGGGATGGAGACTCGGATTTCGGAGGTTTGTCAACTATTAACTATAGATGGTAACACATCAAATGTT ATTGGATTGTGGGGAATGGGCGGTGTAGGTAAAACGACTTTAGCAAGAACTTTATATAATAAATTAACATATCCAACAAACGGGATAAAACATCATTTCA TCTCGATCGACATCAATGACAGTGGCAGGACACGGACTAGTGGAGTTGATGAACTAGTGCAACAACTCTATTCAACTTTGTTATCGGAGAACAACGTCCT AAGTCTCCAAGACTTGGATCTTGATCATAGAAGGGAACGTCTTTCTCGCTTGAAGGTGGTTGTCGTTCTCGATAACGTCGAAACTCCGTGGCAATTGGAG CAGTTACTTTTGGGTGAAATTTGGGATCCGACCAAAATCTTTGGTCCCGATAGTATAATTATTATAACGTCTAGAAATATGAGAGTCCTATTACATGTAA GGGCAAAAATACACTGCATGGAAGGTTTGAATTCGGTCGAATCTCTTCAGCTCTTTAACTTGCATGCATTCAGACAACTGAGTAGCCCTTCAGATGACCT GAAGGCCCTCCCGCCTCTCGTTGTCTCATATTGCAAGGGGAACCCTTTGGCGTTGAAGGTTTTGGGAGGTGCACTGTACGGCAAGGAGAAAGCGTATTGG AAGAGTTTCTTTCTCGGGTTGAAAAGAACTTGGACGAAGCTGGAAATTCATAGTGTTCTTAGTACAAGCTACTACGCGTTGAAAGACGAAGAGAAAAGAT TGTTCATGGACGTTGCTTGTTTCCCCTTCAACACTTCCAAGACTCGGTTGGTCGAATATCTTGCGACTAGTTATGAGTCACCGTATAGTGTGATAGAGGA TCTAATCGACAAGTCGTTGATGTTCACTATACCTTCCAACGACTTGCGTTGCGAGGTGGTTGTGGTGCATGATCTGCTAAAAGAAATGGCTTGGAATATA GTGAAAGAAGAACCACTTCCTAGCCGGTTAAGGAACCCTAGTGATATCTACAAACTATTTGCAATAAGAGAAGCAAAGAAGTCTCGGCTGAGAAAGATAT TCAAAGCCAAAGCCAGGTATGAACATACAAAGGATGCCTTTGAGGGAGGTAAATCAATCCAAAGTTTGTCTTTAAACCTTTCTAAGACTAAGGACAAAGA GGTGTGTTTGGTAGCCAAAGCCTTTGAAGGGATGGACTCTCTTAGATTCTTGGGATTCTACGGCCATCAAGCGCTAGAGCTGATTGGGGTTCATAAAATC CGCCTGGCTGACGGAGGGCTTGACACCCTCCCTAATGAGTTAAGGTGGCTCGAATGGACCGAATATCCTTTAAAATGTCTTCCTCCAAAGTTTCATCCTG AAAAACTTGTCACACTTTCGTTACAATATAGTCAAGTTCAAAGGTGCTGGCCGGAAGGACTTGAGCCAAAGCTTGTGCATCTTATCACGCTCGACCTCTC CTACTGCATATATCTAAAAGTCGTCCCAAACTTGTTAGCCTCTAAAAAGCTCGAGTTACTCCGTCTCAAAGGGTGCAAGAGCTTAGTTGAGTTACCGTCT CATGTTCAAGATTTGGGCAAGCTGGTCGAGGTGGACCTTTGCGGATGTTTGAATCTGGTTCGTCTCCCGGCGAGGTTCAACTCAAAATGCTTGAAGTACG TTCGGTTAGCCGGATGTCCAAAACTCACTCATTATCCGGAGGTCCATAGTTCAGAAGGTGTGCTTCAAGTATGGGATTTGGATGGGACACCAACCCGGGA GCTACCGATTGCGGTACACAAGTTCAACGGCCTACATCTACGTCGAAAATGCATCACTACCTTGAAACGTCTTCGTTTGTGCCATATCACAATGACCAAA GACATCCATGACGATGAATATGGTGATAATAGTGATAGTGACATCAGCAGTATAATTGACAGGGTCTTTGCGCTGTAA
AA sequence Show only first row Show all	>Lus10006732 pacid=23163533 polypeptide=Lus10006732 locus=Lus10006732.g ID=Lus10006732.BGIv1.0 annot-version=v1.0 MACYTGKWEYDVFVCFRGKDTRRLFTSHLAEQLRQRSIRTFTDEIFDRTEEIDAGLLDLLERSAMSVVIFSESFAESSYCLDEVAAIAQSVERFGHRVLP VFYGVDPDDVAGGVIVAELNGSVEKKKRWMDGLKEVSKLAGRTSKEFKDDCEMCKKIVDDVLKALSDMCSKRKPNNLVGMETRISEVCQLLTIDGNTSNV IGLWGMGGVGKTTLARTLYNKLTYPTNGIKHHFISIDINDSGRTRTSGVDELVQQLYSTLLSENNVLSLQDLDLDHRRERLSRLKVVVVLDNVETPWQLE QLLLGEIWDPTKIFGPDSIIIITSRNMRVLLHVRAKIHCMEGLNSVESLQLFNLHAFRQLSSPSDDLKALPPLVVSYCKGNPLALKVLGGALYGKEKAYW KSFFLGLKRTWTKLEIHSVLSTSYYALKDEEKRLFMDVACFPFNTSKTRLVEYLATSYESPYSVIEDLIDKSLMFTIPSNDLRCEVVVVHDLLKEMAWNI VKEEPLPSRLRNPSDIYKLFAIREAKKSRLRKIFKAKARYEHTKDAFEGGKSIQSLSLNLSKTKDKEVCLVAKAFEGMDSLRFLGFYGHQALELIGVHKI RLADGGLDTLPNELRWLEWTEYPLKCLPPKFHPEKLVTLSLQYSQVQRCWPEGLEPKLVHLITLDLSYCIYLKVVPNLLASKKLELLRLKGCKSLVELPS HVQDLGKLVEVDLCGCLNLVRLPARFNSKCLKYVRLAGCPKLTHYPEVHSSEGVLQVWDLDGTPTRELPIAVHKFNGLHLRRKCITTLKRLRLCHITMTK DIHDDEYGDNSDSDISSIIDRVFAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	0	1
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	3.5	0.7934
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	9.2	0.7846
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	16.5	0.8233
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	16.9	0.7822
AT5G27350		SFP1	Major facilitator superfamily ...		Lus10035355 [exp]	25.3	0.7725
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	27.9	0.7737
					Lus10028488 [exp]	30.3	0.8116
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	30.4	0.7883
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	30.6	0.7675
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10013959 [exp]	37.5	0.7856

Compare expression of checked genes

Lus10006732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.