Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 274 / 7e-89 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G05100 261 / 2e-84 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 246 / 4e-79 MYB ATMYB41 myb domain protein 41 (.1) AT3G02940 231 / 9e-73 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 228 / 2e-71 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G54230 228 / 3e-71 MYB ATMYB49 myb domain protein 49 (.1) AT1G34670 228 / 6e-71 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 224 / 5e-70 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G10280 222 / 5e-69 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G65230 216 / 3e-67 MYB ATMYB53 myb domain protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020085 [exp] 407 / 3e-141 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 288 / 2e-94 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 274 / 3e-89 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 254 / 2e-82 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033003 [exp] 226 / 6e-70 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10036472 [exp] 217 / 3e-67 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10026620 [exp] 216 / 6e-67 AT3G01140 294 / 2e-98 NOECK, myb domain protein 106 (.1) Lus10041142 [exp] 216 / 6e-67 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10014784 [exp] 206 / 2e-63 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033100 [exp] 279 / 2e-90 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 270 / 4e-87 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 267 / 4e-86 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.001G408700 [exp] 254 / 3e-81 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 254 / 4e-81 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G148600 [exp] 250 / 1e-79 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 227 / 7e-71 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 226 / 1e-70 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.017G086300 [exp] 228 / 2e-70 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.007G093900 [exp] 225 / 5e-70 AT1G34670 289 / 6e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006740 pacid=23163532 polypeptide=Lus10006740 locus=Lus10006740.g ID=Lus10006740.BGIv1.0 annot-version=v1.0 ATGGGAAGATCGCCCTTAAGTTGTGAGAAGAATGGGTTGAAGAAAGGGCCATGGACTCCTGAGGAAGACCAAAAGCTCATCAATTACATTCAACTTCATG GCTATGGCAATTGGCGTACCCTCCCCTTAAATGCCGGGTTACAAAGGTGTGGTAAGAGTTGCCGTCTCCGATGGACTAACTATCTTCGACCGGATATTAA GAGAGGACGGTTCTCGTTTGAAGAGGAGGAGGTTATCATTCAGCTCCATAGTATTCTCGGAAACAAGTGGTCGGCGATTGCGTCTCGCTTGCCCGGAAGG ACGGACAACGAAATTAAAAATTACTGGAATACACATATTCGGAAGAGGCTATTAAGAATGGGAATTGACCCGGTGACCCACAGTCCAAGACTCGATCTTT TAGACCTTTCGGCCATTTTGGGCTCATCCTTTTCTTCTTCTTCGCAGCCTAACTTCTCCAGGTTGCTCGGCTTGGTCAACCCTGAAATTTTACACCTCGC CACTTCCCTCGTCTCATCCGAAACCGAACTCCAAAACCAAACCCAAACCCAAACCCAAACCGGAACATTTTATGATCCGCCGAACCCGCAGTACCAACCG ATGGTCAACCCTGAGTTTCAGGACATGACAACTACTACTATGGCCACCACCACAACCATTCCGGATGAGCCATTTGTCGAGGTGGGCCCCTCTGATTGGC AGAGAAGTTATACGCTGGAAAGCTACGATCATCTTAATGACTACTGCTACGGGACATCGTCGTTTGATGATCGCCAAACGGCCGGTAATACTATTACGGA CTTGTCAACGGAGAATTGCTTTGGTTTCCCACCGGCGGCGGCTTCAGGGTTTTCAACGCCATCGTCGAGCCCGACGTCGTTGAACTCCAACTCAACTTTG AATAATGTCAACGCCGGAAGTTGTACGGAGGACGAGAGAGATAGCTACTGTAGTAATATGTTGAGGTTTGAGATGCCTCCTAGTATTTTGGATCTATACA CCACACTTGTTTCTCGTGTCAAGCCTTGTGTCTCCTCAGGTTCTCCCGTACGGGCATGTCCTGATCAACATGGTCACTACAGGCCCGTAGCTTCTCCAAG AGATCTACTTGACGCTTTCGGTGGGGATTTGACAAGTGGATGTTGCGGTGACGTGAAGTTGGTGATTTACAGGCTAGTACTGTGTTTGAGCATTCATTTA GTGGCAGCTGGTGGTGTAGTTACCGAAGCACACATTGTGGAGCTGGTGGCGCCAATTATTTCGGAGGTCCTAGCCTTCCTTATTGCTTATCCTCTGTCTC CAGGTTGCTAA
AA sequence Show only first row Show all	>Lus10006740 pacid=23163532 polypeptide=Lus10006740 locus=Lus10006740.g ID=Lus10006740.BGIv1.0 annot-version=v1.0 MGRSPLSCEKNGLKKGPWTPEEDQKLINYIQLHGYGNWRTLPLNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEVIIQLHSILGNKWSAIASRLPGR TDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSAILGSSFSSSSQPNFSRLLGLVNPEILHLATSLVSSETELQNQTQTQTQTGTFYDPPNPQYQP MVNPEFQDMTTTTMATTTTIPDEPFVEVGPSDWQRSYTLESYDHLNDYCYGTSSFDDRQTAGNTITDLSTENCFGFPPAAASGFSTPSSSPTSLNSNSTL NNVNAGSCTEDERDSYCSNMLRFEMPPSILDLYTTLVSRVKPCVSSGSPVRACPDQHGHYRPVASPRDLLDAFGGDLTSGCCGDVKLVIYRLVLCLSIHL VAAGGVVTEAHIVELVAPIISEVLAFLIAYPLSPGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	5.5	0.8972
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	8.5	0.9180
					Lus10012564 [exp]	16.4	0.8191
AT3G56800		ACAM-3, CAM3	calmodulin 3 (.1)		Lus10042597 [exp]	17.6	0.8090
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	17.7	0.8960
					Lus10011686 [exp]	19.0	0.8811
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	21.2	0.8844
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	22.7	0.8211
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013583 [exp]	23.4	0.7840
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	25.7	0.7869

Compare expression of checked genes

Lus10006740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.