Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 288 / 1e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 283 / 4e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 280 / 8e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 278 / 4e-79 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 273 / 6e-79 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 275 / 1e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 276 / 2e-78 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G63880 274 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 272 / 2e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G11250 272 / 4e-77 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005813 [exp] 1174 / 0 AT3G44480 297 / 2e-84 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 1038 / 0 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 728 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 692 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 658 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 574 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 540 / 2e-180 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 542 / 3e-177 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 529 / 3e-176 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 374 / 3e-114 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 362 / 6e-108 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 354 / 1e-105 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 341 / 6e-104 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 341 / 4e-101 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 333 / 3e-99 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 327 / 1e-96 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 313 / 3e-93 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 318 / 3e-92 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 317 / 6e-92 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10006789 pacid=23150753 polypeptide=Lus10006789 locus=Lus10006789.g ID=Lus10006789.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTTCATCGTCATCACCTCCTCAGGAGAACTACACCGGAAAATGGGAGTACGACGTGTTTGTGTGTTTTCGAGGCCGAGACACCCGACGTC TCTTCACCAGCCACCTCGCGGGGCATCTGCGCCAGCGCTCGATCCAATCTTTTACGGACCAGATATTGGACAGGGCGGAGAACATCGAGGTCGCCCTCCT CGAGCTCCTCCGTAGATCGGCCCTTTCGGTGGTGATATTCTCGGAGGGATTTGCGGAGTCGAGTTACTGCCTCGATGAGGTGGCCACCATAGCCGAAAGT GTGGAGAGATTCGGCCATCGCGTGCTGCCCGTTTTCTATGGCGTCGACCCCGAGGAGGTCTCCGGCGACGGCCACGGTGGTGGCTATAGGGATGTGATTA AGGCAGAGCTTAAACCTAGTGTGGAGAAGAAGAAGAGATGGATGGATGGTTTGAAGCAAGTGTGCCAACTTGCTGGCCGTACCTCAAAAGAATTCAAGGA CGATTACGAAATGTGCAAGGCAATCGTGGACGATGTTCTGAAGGCACTAAGTGATATGTCTTCGAAGCGAAAACCTAACAGCTTGGTTGGGATGGAAACC CGGGTTTCAGAGGTTTGTCGGCTATTACGTACAGATGGTACATTAAATATTATAGGACTATGGGGGATGGGCGGTGTAGGTAAAACAACTTTAGCTAGAA ATTTGTATCAGAGACTAACCCCTCCGTCGAGATATGGGATCAATCATCATTTCGTGTCGAACATCAACGACAATAATGGCAAGACACGTGGTGGAGTTGA TGAGCTAGTGCAACAGCTCTATTCGGCTCTATTGTCGGAGAACAACAACCTAAGTCTCCAGGATTTGGATCTTAATCACCGAAGAGAACGTCTTTCTCGC CTGAGGGTGGTTGTTGTTCTCGACAATGTGGAGACTCCGCGACAGTTGGAGCAGTTACTTTTGGGGGAAATTTTGGACCCGACCAAACTCTTTGGTCCAT GGAGTACAATCATTATAACGTCTCGAAATATGAGAGTCCTTCAACATGTAAAGGCGAGAATATATCATGTGGAAGATATGAATCCAGATGAATCTCATCA AGTTTTCAACTTGCATGCATTCAGACAACTGAGTAGCCCTTCTGATGACCTAAAGGGTCACTCGCATCTCGCTGTATCATATTGCAAGGGCAACCCTTTG GCGTTGAAAGTTTTGGGAGGCGCATTGTTTGGCAAGGCGAAAGAATATTGGAAGAGTTTCTTTTCTGGATTGGAAAGAAATTCGAAGCCGGAAATCCACG ATGTTCTTAGTACAAGTTACTACGCCTTGAAAGGCGAAGAGCAAAGATTGTTCATGGATGTTGCTTGTTTCCAATTCAACACTCCCAAGGCTCGACTGAT CGAATATCTTGCAACTAGTTACGAGTCGGGGTATAGTATGATAGAAGATCTAATCGATAAGTCGTTGATGTTCACTATAGCTTCGAACGATGTCACGCAC TACGAGGTGGTTGTGGTGCATGATCTTCTGAAAGAAATGGCTTGGAACATAGTAAAAGAAGAATCACTTCCTAGCCGGTTGAAGAACCCTAGTGATGTCC ACACACTATTTGCAATAAGAAAAACAAAGAAGCGTAGTTGGACATGTTCTAAAGCCAAATATGTACATAGCAAGGATGCCTTTGGGGGAGGTAAAGCAAT CCAAAGTTTGGCTTTAAACCTTTCTAAAACCAAGAAGAAGGAGCTGTGTCTTGGAGCCAAAGCCTTTGAGGGGATGGACTCGCTTAGGTTGTTGGCATTC TATGGTCACAAAGCGGCGGAGCTCGTTGGGGTCCCTGAAATCCGTCTAGTCAATGGAAGGCTTGACACCTTACCTATCGGGTTAAGGTGGCTCGAGTGGA CTGGATATCATTTGAAATGTCTTCCTCAAAAATTTTATCCTGAAAATCTTGTCACGCTTTCGCTACGACATAGTCGAGTTGAAAGGTGTTGGCCCAAAGG AGTCAAGCCAAAGCTTGTGCATCTTATCACGCTCGACCTCTCCTACTCCACAAATTTAAAGATCGTCCCAAACCTGTCAGGCTCCAAAAATCTCGAGTTA CTCCGTCTCACAGGATGCAAGAGGCTAGTTGAGATACCCTCTCATGTTCAATATTTGGACAAACTCGTTGAATTGGACCTTTGTGAATGTTCAAATTTGG TTCGTGTCCCGGCCATACTCAACTCGAAACGCTTGAAATACGTTCGGTTAGCTAGATGCCCTAGACTCGATCAATGTCTGCAAATCAATAGTTCAGAGGT GGTGCTAGAAGTATTGGATTTAGTGGAGACACCAATTGGGGTACACAAGTTCTACCGCCAATGTTACCGTGGCAAATGCGCCATTGCCTTGAAACATCTT TATCGGTCCCATACCACAATGAGGACAAAAAACAGCTACAATTACGACTCTGGCAATAGCAGTCCGAGTTCCCTGGTCAGCTACATAATGAGTCCAAGGT CCCCGGTCAGCTACTTTTCGTAA
AA sequence Show only first row Show all	>Lus10006789 pacid=23150753 polypeptide=Lus10006789 locus=Lus10006789.g ID=Lus10006789.BGIv1.0 annot-version=v1.0 MSSSSSSSPPQENYTGKWEYDVFVCFRGRDTRRLFTSHLAGHLRQRSIQSFTDQILDRAENIEVALLELLRRSALSVVIFSEGFAESSYCLDEVATIAES VERFGHRVLPVFYGVDPEEVSGDGHGGGYRDVIKAELKPSVEKKKRWMDGLKQVCQLAGRTSKEFKDDYEMCKAIVDDVLKALSDMSSKRKPNSLVGMET RVSEVCRLLRTDGTLNIIGLWGMGGVGKTTLARNLYQRLTPPSRYGINHHFVSNINDNNGKTRGGVDELVQQLYSALLSENNNLSLQDLDLNHRRERLSR LRVVVVLDNVETPRQLEQLLLGEILDPTKLFGPWSTIIITSRNMRVLQHVKARIYHVEDMNPDESHQVFNLHAFRQLSSPSDDLKGHSHLAVSYCKGNPL ALKVLGGALFGKAKEYWKSFFSGLERNSKPEIHDVLSTSYYALKGEEQRLFMDVACFQFNTPKARLIEYLATSYESGYSMIEDLIDKSLMFTIASNDVTH YEVVVVHDLLKEMAWNIVKEESLPSRLKNPSDVHTLFAIRKTKKRSWTCSKAKYVHSKDAFGGGKAIQSLALNLSKTKKKELCLGAKAFEGMDSLRLLAF YGHKAAELVGVPEIRLVNGRLDTLPIGLRWLEWTGYHLKCLPQKFYPENLVTLSLRHSRVERCWPKGVKPKLVHLITLDLSYSTNLKIVPNLSGSKNLEL LRLTGCKRLVEIPSHVQYLDKLVELDLCECSNLVRVPAILNSKRLKYVRLARCPRLDQCLQINSSEVVLEVLDLVETPIGVHKFYRQCYRGKCAIALKHL YRSHTTMRTKNSYNYDSGNSSPSSLVSYIMSPRSPVSYFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	5.1	0.8815
					Lus10041663 [exp]	6.9	0.8606
					Lus10004679 [exp]	6.9	0.8645
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10005813 [exp]	7.0	0.8359
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	7.2	0.8748
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	9.7	0.8509
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031775 [exp]	10.2	0.8129
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	14.3	0.8385
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	15.7	0.8293
AT5G47830			unknown protein		Lus10018732 [exp]	15.9	0.8080

Compare expression of checked genes

Lus10006789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.