Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 251 / 6e-74 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 221 / 1e-62 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 184 / 1e-50 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G46530 172 / 2e-46 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 155 / 2e-40 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 154 / 3e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 152 / 2e-39 NB-ARC domain-containing disease resistance protein (.1) AT3G46710 149 / 2e-38 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 146 / 2e-37 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 145 / 3e-37 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011278 [exp] 337 / 3e-105 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 311 / 4e-95 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 309 / 1e-93 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 280 / 2e-84 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10028279 [exp] 263 / 5e-78 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 243 / 3e-70 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 227 / 7e-65 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 224 / 7e-64 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 220 / 2e-62 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G272066 [exp] 313 / 2e-96 AT3G14470 299 / 2e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.006G271800 [exp] 306 / 6e-94 AT3G14470 345 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Potri.006G275800 [exp] 307 / 6e-93 AT3G14470 345 / 3e-100 NB-ARC domain-containing disease resistance protein (.1) Potri.006G273900 [exp] 286 / 1e-86 AT3G14470 364 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 275 / 2e-82 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 273 / 1e-81 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 270 / 1e-80 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.001G025400 [exp] 265 / 4e-79 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 265 / 3e-78 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 262 / 6e-77 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10006794 pacid=23150772 polypeptide=Lus10006794 locus=Lus10006794.g ID=Lus10006794.BGIv1.0 annot-version=v1.0 ATGGCTGAAACTATTGTTTCTCCTCTTGCTCAACTAATTCTTGGCAAGTTGGCTGATTTGGCTTTGGAAAAAATTGCAGCCATTTTGACTGTGAAACAGG AGATCATGAAACTCCGGGACACCGTATTGACCATCAAGGCCGTGCTTCTTGATGCCGAGGAGAAGCAGAACCACAATCGGCAAGTCAAAGTTTGGCTGGA GAAGCTCTCAGATGTGTTTTACGATGCAGATGATCTGCTTGACGACTTCTGTACCGAGGCTCACCAGCAAGCTATGGCAGCAGTAAGTGATAGCAGGAGG AGAACAACTGCTTGTTTGAGCTCGGTACGCTTCCGATTTTTCCCTTCATTTCTGAAGCAGTTGAGTTATGGCTGTAAGATGGCCCGTGATATCAAGGCTG TTAGGGAGAAGCTCGAGGCTATAAAGATGGAGAGGGCATTTCACTTGGATGAACTGACGGAGGAATCTCTAAGTCCCCCTTCGAGGGAGACCGACTCTTG TCCGCCTTTAATCGTTGTTGGGAGGGACGATGACAAGAACGACATCATCCAGATGTTGCTGGACGGAGATTTCGAAGCCAACGTTTCGATCGTTCCGATT GTCGGTATGGGCGGGATGGGTAAGACTACTCTAGCTCAGCTTGTGTTTGACGACAAACAAGTTCAGGATTTTTTCGCTGTCAAAGTCTGGGTCTATGTCT CGCAGACCTTTGATATCAAAGTAATTCTTGAGAAGATGCTGAACTCTATAACTCGGGAAAGCCGGACCGGTCTCGAATTGGACGTGTTGCAAGCTCAGCT TCGAGAAAAAATCGCCGGCAAGAGGTTCCTGTTTGTGCTGGATGATGTCTGGGAAGAGAGCGTTCAGAGTTGGGAAAATTTCGGGAAGTTTTTCGCAGTT GGCTCTCCTGGGAGTAAAGTGTTGGTGACTACTCGATCTAGTGAAGTTGCAAAGGTTGGCGGTGTAGTGCTCCCCTATGTATTGAAAGGCTTGTCAAAAA TGGAGTCTTGGAATTTGTTTGTGAAGAAGGCATTCATTAATGGAAGATTCTCACAGCACAACTCATTCCTGGTGAAAATCGGCAGACAGATACTGGGAAA ATGTCATGGAGTTCCCCTTGCTATAAGTACAATATCTGGTCTGTTGAGTTCTAAGGACTCGGAAATCGAGTGGCAACTGTTTTTCGAAAATGTACTGAAA AGCATCGGCACAGAAGACAGCGGTATTATGTCGACTCTCAAATTGAGCTACGACCATCTGCTACCGCATATGAAGCGTTGTTTCGCTTACTGTAAGTTGT TCCCAAAGGGTCATATGATTGACGTTCCAAGTTTGGTTCAATTTTGGGTATCACAAGGGTACGTTGAGTCGGAAGATGAAGGCTTCGATTGTTTTAAAAG GTTATAG
AA sequence Show only first row Show all	>Lus10006794 pacid=23150772 polypeptide=Lus10006794 locus=Lus10006794.g ID=Lus10006794.BGIv1.0 annot-version=v1.0 MAETIVSPLAQLILGKLADLALEKIAAILTVKQEIMKLRDTVLTIKAVLLDAEEKQNHNRQVKVWLEKLSDVFYDADDLLDDFCTEAHQQAMAAVSDSRR RTTACLSSVRFRFFPSFLKQLSYGCKMARDIKAVREKLEAIKMERAFHLDELTEESLSPPSRETDSCPPLIVVGRDDDKNDIIQMLLDGDFEANVSIVPI VGMGGMGKTTLAQLVFDDKQVQDFFAVKVWVYVSQTFDIKVILEKMLNSITRESRTGLELDVLQAQLREKIAGKRFLFVLDDVWEESVQSWENFGKFFAV GSPGSKVLVTTRSSEVAKVGGVVLPYVLKGLSKMESWNLFVKKAFINGRFSQHNSFLVKIGRQILGKCHGVPLAISTISGLLSSKDSEIEWQLFFENVLK SIGTEDSGIMSTLKLSYDHLLPHMKRCFAYCKLFPKGHMIDVPSLVQFWVSQGYVESEDEGFDCFKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10006794 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	1.0	0.8781
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031112 [exp]	6.8	0.6934
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	11.3	0.7851
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	13.1	0.7748
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	16.1	0.7673
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	16.1	0.7466
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	28.4	0.7457
AT4G03000			RING/U-box superfamily protein...		Lus10041245 [exp]	29.2	0.7434
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	34.1	0.7388
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	34.2	0.7443

Compare expression of checked genes

Lus10006794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.