Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61890 101 / 9e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G43160 99 / 2e-24 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 98 / 9e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 97 / 1e-23 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G07310 98 / 2e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G50080 97 / 2e-23 AP2_ERF ERF110 ethylene response factor 110 (.1) AT5G64750 91 / 3e-20 AP2_ERF ABR1 ABA REPRESSOR1, Integrase-type DNA-binding superfamily protein (.1) AT1G28370 86 / 6e-20 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G72360 86 / 1e-19 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G44840 85 / 5e-19 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005805 [exp] 440 / 2e-155 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10022426 [exp] 98 / 3e-23 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 87 / 2e-19 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10028679 [exp] 87 / 1e-18 AT5G61890 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10003601 [exp] 84 / 3e-18 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037448 [exp] 84 / 1e-17 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10016827 [exp] 82 / 1e-17 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10008214 [exp] 82 / 1e-17 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016211 [exp] 81 / 1e-17 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076800 [exp] 113 / 2e-28 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G195000 [exp] 103 / 2e-24 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.005G087200 [exp] 101 / 4e-24 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G067600 [exp] 99 / 4e-24 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 98 / 1e-23 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.012G108500 [exp] 94 / 4e-22 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.010G006800 [exp] 89 / 3e-20 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.014G047000 [exp] 86 / 1e-19 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.009G101900 [exp] 86 / 5e-19 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.001G181500 [exp] 84 / 6e-19 AT1G71450 184 / 8e-60 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10006796 pacid=23150757 polypeptide=Lus10006796 locus=Lus10006796.g ID=Lus10006796.BGIv1.0 annot-version=v1.0 ATGGATAGGAATAATAGTAAAGGGAAGCAAGTGATTCAGAGTAGTGCGAATCCGCCGTTGACGACGGTGGAAGTGGGAGGAGAAATGGTGGAGGAAGTGG TGAAGGCGACGCCGAGGCATAAGTTGCTGTCGTCGGAGATGGAGATGTCGGCGATGGTCTCAGCCTTGACGCATGTCGTGGCCTCCGGCGGCGGGGGCGC CGGAAGCCAGTTTCCGCCGTTTCCGACGCGGGAAAGCAGTGATTATGAAGTGGGAGGAAGAAGAAAAAGTAACAATCTTTGGATTGGGAATGATGGATTC GGAGCTCCACCGCAGCAGCTTCCTCCTCATCTTCCTCCTCCGGCGAGTGGTGTTCATCTTTACCGGCCAGTTTCATATTTGTTCCCTCCTCCTGCTCAAG GTGGAAGTATAATCAACAACGCATCTCAACCGTTGATCCAACAACGACCACAACCAACATACCAAACGATGAACAATAGAACAGAGGATCCCACGGCAGG GACAGTGGGGAGGAAGTACAGAGGAGTCAGAAGAAGGCCGTGGGGGAAGTGGGCAGCAGAGATTCGAGATCCTATCAAGGCCGCACGAGTATGGCTAGGC ACTTTCGAGACCCCTGAGGCAGCTGCTCGAGCCTACGATGAAGCTGCATTGCGTTTTCGGGGCAGCAAAGCGAAGCTCAACTTCCCCGAGAATGTCAGGA TGGTCATTCCCAACACCACCACCACTACCAACAACAACGTGCCGGTTTTTTCGCAGCAGAACCGGTTTGTAAACACGATGGGGATGAACCGGGATCGAAG GCCGGTGGGTTCTTCTTCTTCACAGTTGGTGTTGGGAGTTGGAGGATACTATGATCAACATCAAAATCAGAATGTGGCTTCTCATCATCATCTTCCTCAG GGATACCAATTTCGACCTTTCCTAGCGCCTTCTCCTCCCGCTCCTCTGTGCTATCAACCTCTGCAGAGCAGTGGCTCAGGGGAGTTCTCGACCGCGCCTT GGCAGGGTTCGTCGGCCGGTGGCAGCAGGGAGACTTCTGCTTCAGGATGA
AA sequence Show only first row Show all	>Lus10006796 pacid=23150757 polypeptide=Lus10006796 locus=Lus10006796.g ID=Lus10006796.BGIv1.0 annot-version=v1.0 MDRNNSKGKQVIQSSANPPLTTVEVGGEMVEEVVKATPRHKLLSSEMEMSAMVSALTHVVASGGGGAGSQFPPFPTRESSDYEVGGRRKSNNLWIGNDGF GAPPQQLPPHLPPPASGVHLYRPVSYLFPPPAQGGSIINNASQPLIQQRPQPTYQTMNNRTEDPTAGTVGRKYRGVRRRPWGKWAAEIRDPIKAARVWLG TFETPEAAARAYDEAALRFRGSKAKLNFPENVRMVIPNTTTTTNNNVPVFSQQNRFVNTMGMNRDRRPVGSSSSQLVLGVGGYYDQHQNQNVASHHHLPQ GYQFRPFLAPSPPAPLCYQPLQSSGSGEFSTAPWQGSSAGGSRETSASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	5.7	0.7577
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10012995 [exp]	5.8	0.7544
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	8.0	0.6709
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10030677 [exp]	9.2	0.6749
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	12.7	0.6721
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	14.1	0.7180
					Lus10002396 [exp]	15.3	0.6684
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	19.9	0.6679
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	21.0	0.6209
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	21.4	0.6683

Compare expression of checked genes

Lus10006796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.