Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39390 475 / 1e-169 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT4G09810 466 / 7e-166 Nucleotide-sugar transporter family protein (.1) AT1G34020 445 / 2e-157 Nucleotide-sugar transporter family protein (.1) AT1G21070 270 / 1e-88 Nucleotide-sugar transporter family protein (.1) AT1G76670 270 / 2e-88 Nucleotide-sugar transporter family protein (.1) AT5G42420 263 / 8e-86 Nucleotide-sugar transporter family protein (.1.2) AT2G28315 162 / 6e-47 Nucleotide/sugar transporter family protein (.1) AT2G30460 154 / 9e-44 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 150 / 3e-42 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT5G55950 73 / 3e-14 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005790 [exp] 562 / 0 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033531 [exp] 452 / 4e-160 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 437 / 1e-153 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 265 / 1e-86 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 265 / 3e-86 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10021464 [exp] 171 / 4e-50 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 161 / 3e-46 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 155 / 1e-43 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 148 / 5e-42 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077900 [exp] 505 / 0 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G086700 [exp] 488 / 9e-175 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.002G064700 [exp] 469 / 7e-167 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 467 / 4e-166 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 265 / 2e-86 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 263 / 5e-86 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G011100 [exp] 162 / 1e-46 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 162 / 2e-46 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 157 / 1e-44 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 157 / 1e-44 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10006810 pacid=23150746 polypeptide=Lus10006810 locus=Lus10006810.g ID=Lus10006810.BGIv1.0 annot-version=v1.0 ATGTCTTCGCCAAGCAAAGCTGATAAGAAGGCAACTCTCGATACAGCATCATGGATGTTCAATGTCGTCACCTCGGTTGGAATCATCCTCGTCAACAAAG CTCTCATGGCTACCTATGGCTTTAGTTTCGCAACCACTTTAACCGGTCTCCATTTCGCCACAACGACCTTGTTAACTCTTGTTCTAAGATGGCTGGGATA CATTCAACCATCTCATTTGCCATTACCGGACCTTTTGAAGTTCGTTCTGTTTGCGAATTTCTCCATTGTTGGTATGAACGTCAGCCTAATGTGGAACTCA GTTGGATTTTATCAGATTGCCAAGCTGAGTATGATCCCAGTTTCATGCGTTCTGGAAGTTTTCTTGGACAATGTTAGGTATTCGCGAGACACCAAGCTTA GCATACTAGTAGTCCTTGTAGGAGTTGGTGTTTGCACCGTTACAGACGTGAGCGTCAACGCGAAAGGATTCATAGCAGCAGCCATAGCCGTCTGGAGCAC TTCACTGCAACAATATTATGTACACTATCTACAACGAAGGTACAATCTCGGTTCTTTCAACTTGTTAGGACACACCGCTCCAGCACAGGCTTCGTCTCTG CTGCTAGTTGGCCCGTTCGTGGACTACCTTCTGACTGGCAAACGAGTTGATGCTTATCCCTACAGTTTCACCTCTGTTGCATTCATAGTCTTGTCGTGCA CCATCGCAGTCGGAACCAACCTGAGCCAGTTCATCTGCATCGGAAGGTTCACCGCGGTCTCGTTCCAGGTCCTCGGCCACATGAAGACGATCCTCGTCCT AGTCCTCGGCTTCATCTTCTTTGGCAAAGACGGGCTGAACCTCCACGTGGTAGTCGGGATGATCATCGCCGTTGCCGGGATGATCTGGTACGGCAATGCC TCGTCGAGACCCGGCGGGAAAGAGCGCCGCAGCCTCTCCATGAACGGCGGCAAAGGGTCGTCTAAGCACGACGCCTCGTCAGAGGCCACCGAGGGGGGCG AGGAGAGAGACTGGTGGAAAATGGAGCGGAGTCCACCGAGGAGGCCGAGGAGAAGGTCTGATGAAATGTAG
AA sequence Show only first row Show all	>Lus10006810 pacid=23150746 polypeptide=Lus10006810 locus=Lus10006810.g ID=Lus10006810.BGIv1.0 annot-version=v1.0 MSSPSKADKKATLDTASWMFNVVTSVGIILVNKALMATYGFSFATTLTGLHFATTTLLTLVLRWLGYIQPSHLPLPDLLKFVLFANFSIVGMNVSLMWNS VGFYQIAKLSMIPVSCVLEVFLDNVRYSRDTKLSILVVLVGVGVCTVTDVSVNAKGFIAAAIAVWSTSLQQYYVHYLQRRYNLGSFNLLGHTAPAQASSL LLVGPFVDYLLTGKRVDAYPYSFTSVAFIVLSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFIFFGKDGLNLHVVVGMIIAVAGMIWYGNA SSRPGGKERRSLSMNGGKGSSKHDASSEATEGGEERDWWKMERSPPRRPRRRSDEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	0	1
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10032853 [exp]	2.0	0.7990
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	2.2	0.8253
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	3.6	0.7528
AT3G49720			unknown protein		Lus10011564 [exp]	3.7	0.8209
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	5.5	0.8142
AT3G28580			P-loop containing nucleoside t...		Lus10004258 [exp]	6.8	0.7301
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015283 [exp]	9.2	0.7429
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	9.8	0.7771
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	10.2	0.7672
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10000962 [exp]	11.3	0.7437

Compare expression of checked genes

Lus10006810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.