Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16350 179 / 5e-53 MYB Homeodomain-like superfamily protein (.1) AT5G47390 155 / 2e-44 MYB myb-like transcription factor family protein (.1) AT5G56840 127 / 5e-35 MYB myb-like transcription factor family protein (.1) AT1G70000 121 / 3e-32 MYB myb-like transcription factor family protein (.1.2) AT2G38090 121 / 5e-32 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT1G49010 121 / 6e-32 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G61620 121 / 6e-32 MYB myb-like transcription factor family protein (.1) AT5G58900 119 / 2e-31 MYB Homeodomain-like transcriptional regulator (.1) AT1G74840 118 / 2e-31 MYB Homeodomain-like superfamily protein (.1.2) AT1G19000 115 / 5e-30 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037560 [exp] 450 / 4e-159 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 280 / 6e-92 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 268 / 2e-87 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10040181 [exp] 181 / 5e-54 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 177 / 8e-53 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10013289 [exp] 131 / 8e-36 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 125 / 3e-34 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 124 / 3e-33 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 124 / 3e-33 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189800 [exp] 263 / 1e-85 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 259 / 5e-84 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 174 / 8e-52 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.003G079500 [exp] 156 / 6e-45 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.006G230500 [exp] 137 / 8e-39 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.008G191800 [exp] 130 / 3e-35 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 130 / 4e-35 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.012G073900 [exp] 128 / 3e-34 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2) Potri.006G150300 [exp] 125 / 2e-33 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.006G097300 [exp] 125 / 2e-33 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006826 pacid=23144431 polypeptide=Lus10006826 locus=Lus10006826.g ID=Lus10006826.BGIv1.0 annot-version=v1.0 ATGGGGAATCTGTCCGCTCACTACCATTCATCGTCTCCCGCCGCTTCCCCCAATCCGGACTCCCATTCATCGTCTCCCGCCGCTTCCCCTAATCCGGACT CCCCTGTCTCCGATCACGCCCGCGATTCGGGTCGATTGGCCGACGGCTATTTGTCTGATGATCCGGCTCATGCATCTAGCTCATCTAATCGGCGCGGATA TAGGAAGAAAGGTGTCCCCTGGACAGAAGAAGAGCATCGATTATTCTTAATTGGTCTTCAAAAACTAGGGAAAGGAGATTGGCGTGGAATAGCTCGTAAT TATGTTGTTTCAAGGACTCCTACCCAGGTAGCTAGTCATGCTCAGAAGTATTTCATTCGCCAGAACAATGCGACTCGCAGGAAGCGAAGATCCAGCCTTT TTGACATGGTTACAGACCTGGCGTCTGATCCTCCGCACTCAGTCCCAGAAGAGAAAGAGTTGTTTTCCTTACAAGCGAAGGAAAGTAACAATGCAGATAA TCATCCTTCACTAAACCTTTCTCTTAAGCCAGACTATGAACCAATGGAAACAACATCCGAAGAACCCGCTAACGAAGAGGAAGAAGCCCAGGAAACTACA ATGCGATCGAATGAATCGATACTACATGCTCCAAGACCAACACAGTTTACCTTGTTCGCTCCATCGCAAACAAGCGAATTCACGCCATTCGTTCACCAGT TTGTTCCGGCCTACGTTCCGGTTCCTTATCCATTCTGGCCTGCCAACCCTGTCCCGGTCGAGCAAACTATGGTTACCGAGACGTCCAATCACCAGGTGCT AAGGCCAGTTGCAGTAGTTCCGAAACAGCCAGTCAATGTCGATGAACTTGTCGGCATCTCTAACTTAAGCATCGGAGATTCTTCGCCTTCACCGCTGTCC CTTAAGCTGACATCGGAGACGTCAAGGCACTCTGCGTTTCAAGCTAATGCTCCGGTGTCTCGACCGGAGATCAGCAAGGGAAAGATTCAAGCAGTATGA
AA sequence Show only first row Show all	>Lus10006826 pacid=23144431 polypeptide=Lus10006826 locus=Lus10006826.g ID=Lus10006826.BGIv1.0 annot-version=v1.0 MGNLSAHYHSSSPAASPNPDSHSSSPAASPNPDSPVSDHARDSGRLADGYLSDDPAHASSSSNRRGYRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARN YVVSRTPTQVASHAQKYFIRQNNATRRKRRSSLFDMVTDLASDPPHSVPEEKELFSLQAKESNNADNHPSLNLSLKPDYEPMETTSEEPANEEEEAQETT MRSNESILHAPRPTQFTLFAPSQTSEFTPFVHQFVPAYVPVPYPFWPANPVPVEQTMVTETSNHQVLRPVAVVPKQPVNVDELVGISNLSIGDSSPSPLS LKLTSETSRHSAFQANAPVSRPEISKGKIQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10006826 [exp]	0	1
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	1.4	0.9600
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	2.0	0.9566
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	3.0	0.9544
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	5.7	0.9490
AT2G01690			ARM repeat superfamily protein...		Lus10034578 [exp]	5.9	0.9408
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005659 [exp]	7.5	0.9174
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	11.2	0.9377
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	11.8	0.9378
AT5G24890			unknown protein		Lus10009793 [exp]	13.6	0.9401
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	17.0	0.9276

Compare expression of checked genes

Lus10006826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.