Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58290 526 / 0 RPT3 regulatory particle triple-A ATPase 3 (.1) AT4G29040 322 / 6e-108 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 320 / 3e-107 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT1G53750 281 / 2e-92 RPT1A regulatory particle triple-A 1A (.1) AT5G20000 280 / 6e-92 RPT6A AAA-type ATPase family protein (.1) AT5G19990 280 / 6e-92 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT3G05530 271 / 1e-88 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G09100 271 / 2e-88 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT1G53780 271 / 2e-86 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT1G45000 264 / 7e-86 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037597 [exp] 421 / 2e-150 AT5G58290 419 / 7e-149 regulatory particle triple-A ATPase 3 (.1) Lus10015524 [exp] 322 / 2e-109 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 317 / 4e-106 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10011901 [exp] 320 / 2e-105 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10019995 [exp] 323 / 2e-103 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10031815 [exp] 283 / 1e-92 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10001313 [exp] 280 / 1e-92 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10017762 [exp] 280 / 1e-91 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031243 [exp] 283 / 2e-91 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028000 [exp] 525 / 0 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 523 / 0 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.014G194700 [exp] 326 / 1e-109 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 324 / 8e-109 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.006G216600 [exp] 281 / 2e-92 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 281 / 4e-92 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.008G144100 [exp] 277 / 7e-91 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.018G056600 [exp] 277 / 7e-91 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 275 / 4e-90 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.013G016800 [exp] 271 / 1e-88 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10006854 pacid=23144382 polypeptide=Lus10006854 locus=Lus10006854.g ID=Lus10006854.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCTGCCATGGTGCTGGACCCGAAGCCGGCATCGCCTTCGATCCACCAACCCTTCGCCGCCGACGGCTCGGCTGAGGAGGAGGACCTCTATA GCAAGCTGAAGTCTCTGGTGAGGCAGCTCGAGTTCCTCGAAATCAAGGAGGAGTACGTCAAAGACGAGCAGAAGAATCTGAAGCGCGAGTACCTCCGCGC GCAGGAGGAGGATATTGGAGGATGTGACATCCAAAAGCAGGAAATTCGTGAGGCTGTAGAGTTACCACTGACTCATCACGAGCTGTACAAGCAAATTGGT ATCGACCCTCCTCGTGGTGTGTTACTCTATGGTCCCCCTGGTACTGGGAAAACCATGCTTGCTAAGGCTGTTGCCAATCACACTACAGCAGCTTTCATTA GAGTTGTTGGGTCTGAGTTTGTTCAGAAGTATTTGGGAGAGGGCCCCCGCATGGTTCGTGATGTTTTCCGACTGGCCAAGGAGAATGCTCCTGCAATTAT TTTTATTGATGAGGTGGATGCTATTGCTACGGCTAGGTTTGATGCACAGACAGGAGCTGATAGAGAAGTTCAACGTATCCTGATGGAGCTTCTGAATCAG ATGGACGGGTTTGATCAGACTGTGAATGTAAAGGTTATAATGGCAACTAACCGTGCCGATACACTGGACCCTGCACTTCTTCGTCCTGGAAGGCTGGACA GGAAAATCGAATTCCCTCTGCCTGATAGACGTCAGAAAAGGCTCGTCTTCCAGGTTTGCACTGCTAAAATGAATCTCAGTGACGAGGTTGATTTGGAAGA TTATGTGTCACGGCCAGATAAAATTAGCGCTGCTGAGATCTCAGCCATATGCCAGGAAGCAGGGATGCATGCTGTCAGGAAGAACAGGTACGTAATACTG CCCAAGGACTTCGAGAAGGGTTACCGTTCCAACGTGAAGAAGCCCGATACCGATTTCGAGTTCTACAAGTAA
AA sequence Show only first row Show all	>Lus10006854 pacid=23144382 polypeptide=Lus10006854 locus=Lus10006854.g ID=Lus10006854.BGIv1.0 annot-version=v1.0 MASAAMVLDPKPASPSIHQPFAADGSAEEEDLYSKLKSLVRQLEFLEIKEEYVKDEQKNLKREYLRAQEEDIGGCDIQKQEIREAVELPLTHHELYKQIG IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ MDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEISAICQEAGMHAVRKNRYVIL PKDFEKGYRSNVKKPDTDFEFYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	0	1
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	1.4	0.9090
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	3.5	0.9053
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10027288 [exp]	3.7	0.8859
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	4.9	0.9052
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	5.1	0.8878
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	5.3	0.8942
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	5.5	0.8953
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031278 [exp]	5.5	0.8996
AT4G12340			copper ion binding (.1)		Lus10032225 [exp]	5.7	0.8924
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	6.6	0.8917

Compare expression of checked genes

Lus10006854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.