Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44220 248 / 7e-79 Protein of Unknown Function (DUF239) (.1) AT5G18460 242 / 2e-76 Protein of Unknown Function (DUF239) (.1) AT5G56530 235 / 8e-74 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT3G13510 231 / 2e-72 Protein of Unknown Function (DUF239) (.1) AT1G55360 228 / 3e-71 Protein of Unknown Function (DUF239) (.1) AT2G17750 227 / 4e-71 NIP1 NEP-interacting protein 1 (.1) AT1G70550 223 / 3e-69 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 223 / 1e-68 Protein of Unknown Function (DUF239) (.1) AT5G50150 218 / 2e-67 Protein of Unknown Function (DUF239) (.1) AT2G44250 218 / 3e-67 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006863 [exp] 455 / 2e-160 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10006859 [exp] 426 / 6e-149 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006861 [exp] 426 / 6e-149 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 408 / 4e-142 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10036985 [exp] 413 / 1e-140 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 401 / 2e-139 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006860 [exp] 369 / 4e-127 AT5G18460 199 / 9e-61 Protein of Unknown Function (DUF239) (.1) Lus10036998 [exp] 373 / 1e-126 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 249 / 1e-79 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233000 [exp] 243 / 8e-77 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 238 / 7e-75 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 238 / 8e-75 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 236 / 4e-74 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 235 / 1e-73 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 220 / 5e-68 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 216 / 4e-66 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 216 / 6e-66 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 215 / 1e-65 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.006G233700 [exp] 176 / 1e-51 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10006858 pacid=23144401 polypeptide=Lus10006858 locus=Lus10006858.g ID=Lus10006858.BGIv1.0 annot-version=v1.0 ATGGAGATGGCTAAATCTCACAATACTATGAGTTTCAGAGTTTTACCTCTTATATTATTCTCCCTGGTTCTCGATTTCGGCATAAACGGTATGGTTTACG ATGATGATGTGAAGTTTGATCGTAACAGCATATTAAAAACAATTGTGAGTGGAGATGAAATTATTGATTGTGTGGATATTTATAAACAACCTGCTTTCAA CCATCCATTTCTGAAGAATCATACTCTTCAGTTGAAACCAAGTTCATATCCGACTGGATCGAAATCAAAAGTTTCGACTAGCTCAACGAAGCACATTCAA ATGTGGCATGGGAATGGAGAGTATTGCCCCAAAGGAACAGTCCCAATCTTGAGATCCTCGGCGAAAAATCTTAGGGCACTGAGTAACGCCAACTCAAACT CGGTCAAGATCCCCCATCCCGAGTTTGCGCGAGTAGTTTTGACGGGGTCGAATTTCTATGGAGTCAATGCGGATATGAGCATATGGAACCCAAGAGTACA ACCAAATGAATCGAGCTCATCTCAGGTTTGGTTAACCGACGGCGAAGGGGTCAAACTCGAGTCGATTGAAGCCGGTTGGATGGCCGATGGATATGGAGCA TCGGGATGCTACAATCTAGAGTGTTCTGGTTTTGTTCAAAAGAGCAAGACGATGGTCGTCGGTGCTTATTTGAATCCCGTCTCAATCTACGACGGCCAAC AAAATGGCATCAACCTCAAAATTTACAAAGACTTTAAAACGGGCAACTGGTGGCTAAACGTGCTAGGAACCGATGTTGGGTACTGGCCAGCTGTGCTATT CGCGAACCTGAAGGCATCAGCGCAACGAATAGAGTGGGGAGGTAAAGTTATCAACACAAACCCGCAAGGGATTCACACAACGACTCAGATGGGGAGCGGC CACTTCCCGATCGAAGGGTTCGGGAGGGCGGCCTGGTTCAGGAACTTGGAGTACATTGACGAAAGCGGATTCTTCAGCCACGCTGGGGATGTTTCGCACG AAGCTACGAGACCCGAATGTTACGACGTTGAAGTCCCAAAGTGGGATGCGGAACTCGGTGCTAGTTTCCTCTACGGTGGCCGTGGCTATTCGCCTGCTTG CCATTAG
AA sequence Show only first row Show all	>Lus10006858 pacid=23144401 polypeptide=Lus10006858 locus=Lus10006858.g ID=Lus10006858.BGIv1.0 annot-version=v1.0 MEMAKSHNTMSFRVLPLILFSLVLDFGINGMVYDDDVKFDRNSILKTIVSGDEIIDCVDIYKQPAFNHPFLKNHTLQLKPSSYPTGSKSKVSTSSTKHIQ MWHGNGEYCPKGTVPILRSSAKNLRALSNANSNSVKIPHPEFARVVLTGSNFYGVNADMSIWNPRVQPNESSSSQVWLTDGEGVKLESIEAGWMADGYGA SGCYNLECSGFVQKSKTMVVGAYLNPVSIYDGQQNGINLKIYKDFKTGNWWLNVLGTDVGYWPAVLFANLKASAQRIEWGGKVINTNPQGIHTTTQMGSG HFPIEGFGRAAWFRNLEYIDESGFFSHAGDVSHEATRPECYDVEVPKWDAELGASFLYGGRGYSPACH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44220			Protein of Unknown Function (D...		Lus10006858 [exp]	0	1

Compare expression of checked genes

Lus10006858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.