Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23340 200 / 8e-61 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 200 / 1e-60 Protein of Unknown Function (DUF239) (.1) AT2G44220 195 / 5e-59 Protein of Unknown Function (DUF239) (.1) AT5G50150 192 / 8e-58 Protein of Unknown Function (DUF239) (.1) AT2G17750 190 / 3e-57 NIP1 NEP-interacting protein 1 (.1) AT1G70550 189 / 1e-56 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 187 / 2e-55 Protein of Unknown Function (DUF239) (.1) AT3G48230 181 / 8e-54 Protein of Unknown Function (DUF239) (.1) AT3G13510 180 / 3e-53 Protein of Unknown Function (DUF239) (.1) AT1G55360 180 / 5e-53 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006859 [exp] 398 / 3e-138 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 387 / 1e-134 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 381 / 7e-132 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006861 [exp] 376 / 6e-130 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10006863 [exp] 342 / 1e-116 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 337 / 1e-114 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10036998 [exp] 303 / 5e-100 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10036985 [exp] 293 / 1e-94 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 209 / 8e-64 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024100 [exp] 201 / 5e-61 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 201 / 5e-61 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 195 / 2e-58 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 194 / 6e-58 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 191 / 1e-56 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 186 / 3e-55 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 183 / 2e-54 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 179 / 6e-53 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 179 / 9e-53 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 140 / 2e-38 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10006860 pacid=23144381 polypeptide=Lus10006860 locus=Lus10006860.g ID=Lus10006860.BGIv1.0 annot-version=v1.0 ATGAATCTTTTACTATTCTCTCTAGTTTTCATCTTCGGCGTAAACGGGAAACTTGATCCTAGCAGTATATTAAAAATTATTGTGTTGAAACCAAGCTCGC ATCTGGCCGGATCGAAATCAATTGTTTCGATCAACTCAACAAAGCTCACTCAAATGTGGCATAGGAGTGGAGAGTATTGCCCTAAAGGAACAGTACCAAT CTTGAGATCGCCGACCACAGATCTCCCTCCGAAGAACAAATATGATCGCCTTAGGACGACATTTAGTAACGCGAGCTCGAATTCGTTGATCCAGATCCCC CATCCCGAGTACGCGACCGTGGTTTTGACCGGCTTGAATATGTACGGAATCAATGCGGATATGAGCGTATGGAGCCCAACTGTACAATACTATGGTGAAT CCAGCTCATCTCAGGTTTGGTTAACCGATGGTGGAGGGGACCGAGTCGAGGCGGTTGAAGCTGGTTGGATGGCTGATGGATATGAAGGATCTGGTTGCTA CAATCTAGACTGTGAGGGTTTTGTACAAACGAGTGAAAGGTTGGTCCTAGGTTCTCAATTCGACCCTGTTTCGATCTATGGCGGAGAGCAACATTTTATC AACGTCAAAATATACAAAGACTTCAAATTCGGCCACTGGTGGCTAAACGTCGAAGGCCAAGATATCGGGTACTGGCCAATTCACCTGTTCGGGAACCTGA GGACTGAAGCACATCAATTAGAGTGGGGCGGTAGAGTTATCAACACGAATCCGAAACGGTTCCACACATCGACTCAGATGGGGAGCGGCCATTTCGCGAG GGAAGGCCCGGGAAAGGCCGCCCGGTTTTATGACTTGGAGTACATTGACGAAAACTCATTCTTCGGCCACGTTGGCGATGATATCGAGGTTCATGCTACG AGACCCGAGTGTTACGATGTCAAAGTACAGCCGTGGGATAAGGATCTTAGTGTTAATTTCTTCTATGGTGGTCGTGGCTATTCAAAGGCTTGCCAGTAG
AA sequence Show only first row Show all	>Lus10006860 pacid=23144381 polypeptide=Lus10006860 locus=Lus10006860.g ID=Lus10006860.BGIv1.0 annot-version=v1.0 MNLLLFSLVFIFGVNGKLDPSSILKIIVLKPSSHLAGSKSIVSINSTKLTQMWHRSGEYCPKGTVPILRSPTTDLPPKNKYDRLRTTFSNASSNSLIQIP HPEYATVVLTGLNMYGINADMSVWSPTVQYYGESSSSQVWLTDGGGDRVEAVEAGWMADGYEGSGCYNLDCEGFVQTSERLVLGSQFDPVSIYGGEQHFI NVKIYKDFKFGHWWLNVEGQDIGYWPIHLFGNLRTEAHQLEWGGRVINTNPKRFHTSTQMGSGHFAREGPGKAARFYDLEYIDENSFFGHVGDDIEVHAT RPECYDVKVQPWDKDLSVNFFYGGRGYSKACQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	0	1
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	1.0	1.0000
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	3.2	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	3.5	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	4.0	1.0000
					Lus10000400 [exp]	4.5	1.0000
					Lus10009372 [exp]	5.5	1.0000
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	5.9	0.9926
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	6.9	0.9889
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	7.3	0.9620
AT2G27930			PLATZ transcription factor fam...		Lus10036044 [exp]	7.7	0.9397

Compare expression of checked genes

Lus10006860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.