Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) AT3G48230 264 / 1e-85 Protein of Unknown Function (DUF239) (.1) AT2G44220 262 / 2e-84 Protein of Unknown Function (DUF239) (.1) AT1G23340 262 / 3e-84 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G56530 258 / 2e-82 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G55360 255 / 2e-81 Protein of Unknown Function (DUF239) (.1) AT3G13510 252 / 2e-80 Protein of Unknown Function (DUF239) (.1) AT1G70550 251 / 8e-80 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 249 / 8e-79 Protein of Unknown Function (DUF239) (.1) AT5G50150 246 / 4e-78 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006859 [exp] 532 / 0 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006862 [exp] 512 / 0 AT2G44220 265 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 442 / 3e-155 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10006863 [exp] 441 / 1e-154 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 415 / 1e-144 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10006860 [exp] 376 / 6e-130 AT5G18460 199 / 9e-61 Protein of Unknown Function (DUF239) (.1) Lus10036998 [exp] 379 / 1e-128 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10036985 [exp] 358 / 4e-119 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 294 / 5e-97 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050100 [exp] 257 / 3e-82 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 256 / 2e-81 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 255 / 2e-81 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 255 / 2e-81 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 254 / 1e-80 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 254 / 2e-80 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.001G003800 [exp] 250 / 1e-79 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.015G080300 [exp] 238 / 2e-74 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 234 / 2e-73 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 194 / 2e-58 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10006861 pacid=23144416 polypeptide=Lus10006861 locus=Lus10006861.g ID=Lus10006861.BGIv1.0 annot-version=v1.0 ATGGCTAAATCTCACAGTTTGAGATTTACGGCTCTTCTATTATTCTCTCTAGCTTTCGATTTCGGCGTAAATGGTAGCGATATGAAGCTTGATCCTAACA GCATATTAAAAACTATTGTGGCCGGAGATGAAACGATCGATTGTGTGGATATTTATAAACAACCCGCTTTCAAACATCCACTTTTGAAGAATCACACTCT TCGATTGAAACCAAGTTCATATCAGATCGGATCGAAATCAAAAGCTCCGGTTAACTCATCAACAAAGCACGTTCAAATGTGGCATAGGAATGGAGACTAT TGCCCCGAGGGAACGGTACCAATCTTGAGATCGTCGACGACAGATATTCCTCCGAAGAACACACATCGTCTTAACGCCAAATCAAACTCAATCCCCCATC CCGAGCTCGCGACAGCGTTTCTAAAAGGAGTTTATATGTATGGACTCAATGCGGAAATGAGCGTATGGAACCCCAAAGTGGCAGAGGCAGATGAATCGAG CACATCTCAAGTTTGGGTGACCGATGGTGGCGGTGGGCCGAATATCGAGGCGATTGAAGCTGGTTGGATGGTCAAGCCATCGAGGCCACACCCCGTACTC TTCATATATTGGACCATTGATGGATATGGAGAATTAGGATGCTACAATTTGGATTGTCCTGGCTTTGTTTTGAAAAGTTCCAAGTACTCCTTCGGTTCTC AAGTACAGCCCACTTCAACCTATGGTGGCGACCAGTATTCTCTTAGCTTCAAAATTTACAAAGATTTCAAAACTAGCGACTGGTGGCTAGACATCGAAGG CACGGATGTAGGGTACTGGCCAGCCGAGCTATTCGAGAAGCTGAACAAATACTCAGAGCTATTAGAGTGGGGAGGGAGAGTTGTCAACACAGATCCAGAC GGGAAACACACAACGACTCAAATGGGGAGCGGCCATTTCCCCGACGAAGGCAATAGAAGGGCAGCCTGGTTCAAGAAGTTGGAGTACATAGACGAGAACG GATTCTTCAGCCCTGTTGTCGATCTCGAAACTCGAGCTACGAGGCCCGAATGTTACGATGTCAAAGTGCGGGGCTGGGATAAGGAGGTTGGTGCTAGCTT CCTCTACGGCGGTCCTGGCTATTCGTTTGCTTGTCGGGATTAA
AA sequence Show only first row Show all	>Lus10006861 pacid=23144416 polypeptide=Lus10006861 locus=Lus10006861.g ID=Lus10006861.BGIv1.0 annot-version=v1.0 MAKSHSLRFTALLLFSLAFDFGVNGSDMKLDPNSILKTIVAGDETIDCVDIYKQPAFKHPLLKNHTLRLKPSSYQIGSKSKAPVNSSTKHVQMWHRNGDY CPEGTVPILRSSTTDIPPKNTHRLNAKSNSIPHPELATAFLKGVYMYGLNAEMSVWNPKVAEADESSTSQVWVTDGGGGPNIEAIEAGWMVKPSRPHPVL FIYWTIDGYGELGCYNLDCPGFVLKSSKYSFGSQVQPTSTYGGDQYSLSFKIYKDFKTSDWWLDIEGTDVGYWPAELFEKLNKYSELLEWGGRVVNTDPD GKHTTTQMGSGHFPDEGNRRAAWFKKLEYIDENGFFSPVVDLETRATRPECYDVKVRGWDKEVGASFLYGGPGYSFACRD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	1.0	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	2.0	1.0000
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	3.5	0.9918
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	4.2	0.9472
					Lus10028652 [exp]	4.2	0.8684
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	4.5	0.9888
					Lus10011218 [exp]	4.5	0.9854
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002611 [exp]	4.5	0.8658
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	4.6	0.9377
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030458 [exp]	5.7	0.8489

Compare expression of checked genes

Lus10006861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.