Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) AT5G18460 260 / 3e-83 Protein of Unknown Function (DUF239) (.1) AT3G13510 257 / 3e-82 Protein of Unknown Function (DUF239) (.1) AT2G44240 255 / 1e-81 Protein of Unknown Function (DUF239) (.1) AT1G55360 253 / 1e-80 Protein of Unknown Function (DUF239) (.1) AT5G56530 249 / 3e-79 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 248 / 7e-79 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G23340 247 / 2e-78 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G70550 244 / 3e-77 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT3G48230 242 / 6e-77 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006861 [exp] 512 / 0 AT5G18460 272 / 8e-88 Protein of Unknown Function (DUF239) (.1) Lus10006859 [exp] 508 / 0 AT2G44220 266 / 1e-85 Protein of Unknown Function (DUF239) (.1) Lus10006863 [exp] 452 / 8e-159 AT2G44220 246 / 5e-78 Protein of Unknown Function (DUF239) (.1) Lus10037600 [exp] 439 / 6e-154 AT1G10750 253 / 5e-80 Protein of Unknown Function (DUF239) (.1) Lus10006858 [exp] 421 / 6e-147 AT2G44220 256 / 3e-82 Protein of Unknown Function (DUF239) (.1) Lus10036998 [exp] 389 / 6e-133 AT2G44220 247 / 9e-77 Protein of Unknown Function (DUF239) (.1) Lus10006860 [exp] 380 / 1e-131 AT5G18460 199 / 9e-61 Protein of Unknown Function (DUF239) (.1) Lus10036985 [exp] 380 / 8e-128 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10033910 [exp] 290 / 4e-95 AT2G44220 292 / 1e-95 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233000 [exp] 270 / 6e-87 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 266 / 2e-85 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.013G050100 [exp] 266 / 2e-85 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 259 / 6e-83 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 257 / 6e-82 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 248 / 4e-78 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.012G088300 [exp] 245 / 1e-77 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 246 / 2e-77 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 238 / 4e-74 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233700 [exp] 204 / 6e-62 AT5G25950 333 / 1e-111 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10006862 pacid=23144410 polypeptide=Lus10006862 locus=Lus10006862.g ID=Lus10006862.BGIv1.0 annot-version=v1.0 ATGGCGATGGCTAAATCTCAGAGTTCCGGGTTTGTGGCTCTTCTACTATTCTCTCTAGTTCTCGGTTTCCGCGTAAATGGTATGGTTAACGATGGCCGCG ACACCAAGGTCGATCCTAGTAGCGTGTTGAAAACAATTGTGAGCGGAGATGAAATTATTGATTGTGTGGATATCTATAAACAACCCGCTTTCAACTATCC ACTCTTGCAAAATCACACTCTCCAATTGAAACCAAGCTCACATCCGACTGGATCGAAATCAATTGTTTCGATCAACTCAACAAAGCTCACTCAAATGTGG CATAGGAATGGAGAGTATTGCCCCGAAAGAACAGTACCAATCTTGAGATCGCCGACCGCAGATCTCCCTCCGAAGAACAAATATGATCGACTTAGGACGG CATTTAGTAACACCAACGCAAACGGGGTCCCCCATCCCGAGTTCGCGATCGCGTTTGTACAAGGACCTGATTTATATGGACTCAATGCGGACATGAGCGT ATGGAACCCCAAAGTAGAAGCAAACGAATCGAGCTCGTCTCAAGTTTGGGTGAGCACTACCGGCGAAGGGCAGATAATCGAGTCGATTGAAGCTGGTTGG ATGGTCACTCCATCAAAGCCACACCCCAAAATCTTCATATATTGGACCATCGATGGATATCTAGCAACCGGATGCTACAATCTAGACTGTCCTGGTTTCG TTCTGACGAGTCACAAGTACTCCCTCGGTTCTCAAGTACAACCCATTTCAACCTACGGCGGCCAACAATATTTTCTTAAATTCAAAATTTTCAAAGACGT GATAAGTGGGAACTGGTGGCTAAACATCCAAGGAGCGAATGTAGGGTACTGGCCCGTTGAGTTATTCACGAACCTGGGGACCTACGCGGAGCTGTTAGAG TGGGGAGGCAGAGTTATGATCAACACGGATCCAGAAGGGATTCACACAACGACTCAGATGGGGAGCGGGCATTTCCCCAGCGAAGGCTATGGCAAGGCGG CCTGGTTTTCGCACTTGCAATACGTGGACCAACACGGATCGTTCAACAACATTACATCGGTGGGTAGTCGAGCTACGAGGCGCGAATGTTACGACGTCCA AGTGCAGGATTTGGGCACGGATCGTAGTGCTAGTTTCCTCTATGGTGGTCCTGGCTAG
AA sequence Show only first row Show all	>Lus10006862 pacid=23144410 polypeptide=Lus10006862 locus=Lus10006862.g ID=Lus10006862.BGIv1.0 annot-version=v1.0 MAMAKSQSSGFVALLLFSLVLGFRVNGMVNDGRDTKVDPSSVLKTIVSGDEIIDCVDIYKQPAFNYPLLQNHTLQLKPSSHPTGSKSIVSINSTKLTQMW HRNGEYCPERTVPILRSPTADLPPKNKYDRLRTAFSNTNANGVPHPEFAIAFVQGPDLYGLNADMSVWNPKVEANESSSSQVWVSTTGEGQIIESIEAGW MVTPSKPHPKIFIYWTIDGYLATGCYNLDCPGFVLTSHKYSLGSQVQPISTYGGQQYFLKFKIFKDVISGNWWLNIQGANVGYWPVELFTNLGTYAELLE WGGRVMINTDPEGIHTTTQMGSGHFPSEGYGKAAWFSHLQYVDQHGSFNNITSVGSRATRRECYDVQVQDLGTDRSASFLYGGPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	2.0	1.0000
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	2.8	1.0000
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	3.5	1.0000
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	3.9	0.9188
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	4.0	1.0000
AT5G28823			unknown protein		Lus10040056 [exp]	4.2	0.8646
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	5.9	0.8332
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10024331 [exp]	6.9	0.8273
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	7.3	0.8222
AT3G18570			Oleosin family protein (.1)		Lus10032461 [exp]	7.4	0.7913

Compare expression of checked genes

Lus10006862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.