Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TAIR10 short description
AT2G44220	246 / 4e-78	Protein of Unknown Function (DUF239) (.1)
AT3G48230	239 / 1e-75	Protein of Unknown Function (DUF239) (.1)
AT5G18460	235 / 2e-73	Protein of Unknown Function (DUF239) (.1)
AT2G44250	233 / 5e-73	Protein of Unknown Function (DUF239) (.1)
AT5G56530	231 / 7e-72	Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
AT2G44240	229 / 2e-71	Protein of Unknown Function (DUF239) (.1)
AT3G13510	229 / 3e-71	Protein of Unknown Function (DUF239) (.1)
AT1G23340	227 / 1e-70	Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
AT1G55360	227 / 3e-70	Protein of Unknown Function (DUF239) (.1)
AT1G10750	228 / 4e-70	Protein of Unknown Function (DUF239) (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10006858 [exp]	475 / 3e-168	AT2G44220	256 / 3e-82	Protein of Unknown Function (DUF239) (.1)
Lus10006862 [exp]	452 / 7e-159	AT2G44220	265 / 1e-85	Protein of Unknown Function (DUF239) (.1)
Lus10036985 [exp]	455 / 6e-157	AT2G44220	218 / 7e-65	Protein of Unknown Function (DUF239) (.1)
Lus10036998 [exp]	444 / 2e-154	AT2G44220	247 / 9e-77	Protein of Unknown Function (DUF239) (.1)
Lus10006861 [exp]	441 / 2e-154	AT5G18460	272 / 8e-88	Protein of Unknown Function (DUF239) (.1)
Lus10006859 [exp]	428 / 2e-149	AT2G44220	266 / 1e-85	Protein of Unknown Function (DUF239) (.1)
Lus10037600 [exp]	423 / 1e-147	AT1G10750	253 / 5e-80	Protein of Unknown Function (DUF239) (.1)
Lus10006860 [exp]	342 / 1e-116	AT5G18460	199 / 9e-61	Protein of Unknown Function (DUF239) (.1)
Lus10033910 [exp]	274 / 5e-89	AT2G44220	292 / 1e-95	Protein of Unknown Function (DUF239) (.1)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.013G050100 [exp]	241 / 9e-76	AT5G18460	635 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.019G024100 [exp]	241 / 2e-75	AT5G18460	622 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.001G233000 [exp]	238 / 2e-74	AT3G13510	621 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.001G003800 [exp]	235 / 2e-73	AT1G55360	689 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.003G221200 [exp]	233 / 7e-73	AT1G55360	716 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.010G044300 [exp]	225 / 5e-69	AT1G70550	664 / 0.0	Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Potri.012G088300 [exp]	223 / 1e-68	AT5G50150	592 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.008G188000 [exp]	222 / 4e-68	AT1G70550	661 / 0.0	Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
Potri.015G080300 [exp]	223 / 5e-68	AT5G50150	637 / 0.0	Protein of Unknown Function (DUF239) (.1)
Potri.006G233700 [exp]	179 / 2e-52	AT5G25950	333 / 1e-111	Protein of Unknown Function (DUF239) (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF03080 [flax] [poplar]	Neprosin	Neprosin

Representative CDS sequence

Show only first row Show all

>Lus10006863 pacid=23144420 polypeptide=Lus10006863 locus=Lus10006863.g ID=Lus10006863.BGIv1.0 annot-version=v1.0

ATGGATAAATCTCACAATATTATGAGTTTCGGAGTTATGGCTCTTATGCTATTCTCTTTAACTTTTGATATCGGTGTAAACGGTATGGTCAATGATGATA

ATCCGAAGGCTGATCGTAACAGTATATTAAAAACTATTGTGAGTGGAGATGAAATTATTGATTGTGTGGATATCTATAAACAACCGGCTTTCAACCATTC

ACTCTTGAAAAATCACACGCTTCAGTTGAAGCCAAGTTCATATCCGACCAGATCAAAATCAAAAATTTTGATTAGCTCAACGAAGCACATTCAAACGTGG

AATAGGAACGGAGAGTACTGCCCCAAGGGGACGGTAGCAATCTTAAGATCGTCGCCGACAGATATCCAACCGAAGAACACAAATGATCCCCCATTTAGTA

ACACCAACCCAAATGCGTCCACGGTCCCTCATCCCGAGTTCGTGGCAGCGTTATCGTCGGGATTTGAGTACTATGGACTCAATGTGAATATGAGCGTATG

GAGCCCAAATGTGCAACCAAATGAAATGAGCACATCTCAAATTTGGATGTCCAATGGTGGGAAGATATTCAGGCGTGAGTTGATTGAAGCTGGTTGGATG

GTCACGGCATCGAAGCCAAACCCCAGCATCTTCGCAGCATATTTGAACCATGATGGAATGGGATGCTACAATCTAGAGTGTCCTGGTTTTGTTCAAACGA

CTTCTACATTCGTACTCGGTGCTCAAATAAAGCCCGTTTCAATCTATGGTGGCCAACAATTTTTCATCAACCTCAAAATTCACAAAGACTCTAAAACGGG

GAACTGGTGGCTAAACATCCAAGGAACCGACATAGGTTACTGGCCAGCGGAGCTATTGCCGAACATGGAGACATCCGCGAAGCTGATAGAGTGGGGAGGG

AAAGTCATCAACACAAACCCGAAAGGGATTCACACAACGACTCAGATGGGGAGCGGGCATTTCCCCAGCGAAGGCTTAGGCAAGGCGGCGTGGTTTAGCA

ACCTGGAATACGTGGACGAGCAATTAAACTTCAGGGATGCCGGCCCTATCGTAGGGGCAGCTTCGAGACCCCAATGCTACAACATCGAAGTGAAGAAGTT

GGATAAGAGATTTGGTACTGGTTTCCTCTATGGTGGTCCTGGCTATTCAGCTGATTGCCAGAAGGTGTAA

AA sequence

Show only first row Show all

>Lus10006863 pacid=23144420 polypeptide=Lus10006863 locus=Lus10006863.g ID=Lus10006863.BGIv1.0 annot-version=v1.0

MDKSHNIMSFGVMALMLFSLTFDIGVNGMVNDDNPKADRNSILKTIVSGDEIIDCVDIYKQPAFNHSLLKNHTLQLKPSSYPTRSKSKILISSTKHIQTW

NRNGEYCPKGTVAILRSSPTDIQPKNTNDPPFSNTNPNASTVPHPEFVAALSSGFEYYGLNVNMSVWSPNVQPNEMSTSQIWMSNGGKIFRRELIEAGWM

VTASKPNPSIFAAYLNHDGMGCYNLECPGFVQTTSTFVLGAQIKPVSIYGGQQFFINLKIHKDSKTGNWWLNIQGTDIGYWPAELLPNMETSAKLIEWGG

KVINTNPKGIHTTTQMGSGHFPSEGLGKAAWFSNLEYVDEQLNFRDAGPIVGAASRPQCYNIEVKKLDKRFGTGFLYGGPGYSADCQKV

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44220			Protein of Unknown Function (D...		Lus10006863 [exp]	0	1

Lus10006863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10006863 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10006863 coexpression network