Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 313 / 4e-107 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 293 / 5e-99 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 280 / 4e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 178 / 4e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 169 / 2e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 164 / 9e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 65 / 1e-11 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G63380 63 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G50130 60 / 4e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G50700 56 / 7e-09 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014690 [exp] 568 / 0 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 493 / 5e-178 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 497 / 1e-175 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 459 / 1e-164 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 379 / 2e-132 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 337 / 1e-116 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 335 / 2e-115 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 318 / 7e-109 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000242 [exp] 254 / 1e-84 AT3G61220 218 / 2e-70 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 337 / 1e-116 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 320 / 1e-109 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 317 / 3e-108 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 315 / 1e-107 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 314 / 3e-107 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 297 / 9e-101 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 272 / 5e-91 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 256 / 2e-84 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 246 / 5e-80 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 197 / 6e-63 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006893 pacid=23142111 polypeptide=Lus10006893 locus=Lus10006893.g ID=Lus10006893.BGIv1.0 annot-version=v1.0 ATGGAAAATGTGTGCAGGTATGCAGTGGTAACAGGACGGAACAAAGGGATTGGGTATGAGATTTGCAAGCAGCTCGCATCGAATGGAATCCTCGTCGTTT TGATCGCTAGAGACCGAGATAGAGGTCTCCAAGCTGTTCATCAGCTAATCAAGCTTCACCCTGCTCTCTCTGACAATATCCTCTTCCACCAACTGGATGT TACCGAGGGTTCCAGCATTTCATCTCTGGCCGATTTCGTGAAAACCCAGTTCGGCAAACTCGACATCCTTGTGAACAACGCTGGGATTTTCGGAGCCCTT TGGCGTGAAGATGTGCTGAAATCTGTATCCTATGATGAGCCTGATTGGCAACAGAAGGTCAACTGGAATGAATCCACCATTAACATTTATGACATGGCTG AAAAGTGCTTGAAAACCAACTACTATGGCTCAAAGCAAATGGTGGAAACTTTCTTACCATTACTTCAGTTGTCCAATTCCCCTAGGATCGTCAACGTTTC CTCTAGAGCTGGGATGCTGAAGTATGAGTGGGCTGTAGGGGTGTTGAGCGATGCTGATAATCTGACAAAGGAAAGAGTGGAAAGTGTGATAAAAAGGTTC ATGGAAGACTTTAAGGATGGTTTGTTGGAGAAGAAAGGTTGGACATCTTTTTCTCCGGCTTATGCCGTTTCAAAAGCATGTTTGAATGCGTATACAAGGA TGGTAGCTAGCAATTATCCGAATTTCTGCGTCAATTGTGTGTGCCCTGGATTCGCGAAAACAGACATTTGTTTACAATACGGTCCGAAGAGTCTTGAAGA AGGAGCCAAGGGTTCGGTGATGTTGGCATTGTTGCCGGACGGGGGTCCTTCTGGACGCCTCTTTGAACACACATCGGAGACACCCTTTTAA
AA sequence Show only first row Show all	>Lus10006893 pacid=23142111 polypeptide=Lus10006893 locus=Lus10006893.g ID=Lus10006893.BGIv1.0 annot-version=v1.0 MENVCRYAVVTGRNKGIGYEICKQLASNGILVVLIARDRDRGLQAVHQLIKLHPALSDNILFHQLDVTEGSSISSLADFVKTQFGKLDILVNNAGIFGAL WREDVLKSVSYDEPDWQQKVNWNESTINIYDMAEKCLKTNYYGSKQMVETFLPLLQLSNSPRIVNVSSRAGMLKYEWAVGVLSDADNLTKERVESVIKRF MEDFKDGLLEKKGWTSFSPAYAVSKACLNAYTRMVASNYPNFCVNCVCPGFAKTDICLQYGPKSLEEGAKGSVMLALLPDGGPSGRLFEHTSETPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006893 [exp]	0	1
					Lus10005514 [exp]	4.2	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	5.8	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	7.1	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	8.2	1.0000
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007110 [exp]	8.9	0.7102
AT5G27260			unknown protein		Lus10007175 [exp]	9.5	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	10.1	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	10.9	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	12.0	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	12.4	1.0000

Compare expression of checked genes

Lus10006893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.