Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 325 / 9e-112 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 311 / 2e-106 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 295 / 7e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 185 / 8e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 172 / 1e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 164 / 1e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 59 / 7e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 58 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G10310 56 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 57 / 5e-09 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014688 [exp] 532 / 0 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 510 / 0 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 489 / 2e-176 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 459 / 8e-165 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 380 / 6e-133 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 367 / 3e-128 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 358 / 5e-125 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 349 / 4e-121 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000242 [exp] 261 / 3e-87 AT3G61220 218 / 2e-70 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 347 / 2e-120 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 327 / 3e-112 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 326 / 4e-112 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 321 / 6e-110 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 318 / 5e-109 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 304 / 2e-103 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 288 / 3e-97 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 270 / 4e-90 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 250 / 1e-81 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 201 / 3e-64 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006894 pacid=23142094 polypeptide=Lus10006894 locus=Lus10006894.g ID=Lus10006894.BGIv1.0 annot-version=v1.0 ATGGCAAAAAGGTATGCAGTGGTAACTGGAGGGAACAAAGGGATTGGGTATGAGATTTGCAAGCAGCTCGCTTCCAATGGAATCCTCGTCGTCTTGACCG CCAGAGACAAAGACAGAGGTCTCCAAGCTGTTCGTCAACTTGTTACCAACGACCCTGCTCTCTCCGACAACATCCTCTTCCAACAACTCGATGTTACCGA CACTTCCAGCATTTCCTCTCTCGCCGATTTCCTCAAAACCCAGTTCGGAAAACTCGACATACTTGTGAACAATGCTGGAATTCTTGGAGCCATTTGGCGC GAAGATATCCTGAAATCTGCAACTTATAATGAGTCTGATTGGCAGCAGAAGCTCAACTGGGATGAGGTGACTGTTAATGTTGATGAACTGGCCGAAGAGT GTTTGAAAACCAACTACTATGGTCCGAAGCAAATGGTGGAAACTTTCTTACCATTACTTCAGTTGTCTGATTCCCCTAGGATCGTCAATGTTTCCTCCAC AGCAGCGAAGTTGAAGATGATGAAGAACGAGTGGGCGGTAGGAGTGTTGAGTGATGTTGAGCATCTGACAGAGGAAAGAGTGGAAGGTGTAGTGAAAAGG TTCATGGAAGACTTCAATGAAGGTATGTTGGAGAAGAAAGGTTGGGCGCCATGTTTCGCTCCTGCTTATACCGTTGCGAAAGTATGTTCGAATGCATACG CGAGAATCATAGCCAAAAAGTATCCAAATTTATGCATCAATTGTGTATGTCCTGGATTCGTGAAGACGGATATTAACTTACAAACAGGTCCAAACAATTC CGAAGAAGGAGCCAAGGGTCCGGTGATGTTGGCATTGTTGCCGGACGGGAGTTCTTCTGGACGATTCTACGATCAGACAGTGGAAGCTTCGTTTTGA
AA sequence Show only first row Show all	>Lus10006894 pacid=23142094 polypeptide=Lus10006894 locus=Lus10006894.g ID=Lus10006894.BGIv1.0 annot-version=v1.0 MAKRYAVVTGGNKGIGYEICKQLASNGILVVLTARDKDRGLQAVRQLVTNDPALSDNILFQQLDVTDTSSISSLADFLKTQFGKLDILVNNAGILGAIWR EDILKSATYNESDWQQKLNWDEVTVNVDELAEECLKTNYYGPKQMVETFLPLLQLSDSPRIVNVSSTAAKLKMMKNEWAVGVLSDVEHLTEERVEGVVKR FMEDFNEGMLEKKGWAPCFAPAYTVAKVCSNAYARIIAKKYPNLCINCVCPGFVKTDINLQTGPNNSEEGAKGPVMLALLPDGSSSGRFYDQTVEASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	2.0	0.8708
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	2.0	0.8927
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	2.6	0.8968
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	3.0	0.8910
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018501 [exp]	3.5	0.8652
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	5.5	0.8668
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10027434 [exp]	6.0	0.8477
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	6.5	0.8574
AT5G56860	GATA	GATA21, GNC	GATA, nitrate-inducible, carbo...		Lus10040556 [exp]	8.9	0.8266
AT5G62680			Major facilitator superfamily ...		Lus10036669 [exp]	9.8	0.7891

Compare expression of checked genes

Lus10006894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.