Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17600 71 / 2e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 67 / 3e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 66 / 7e-11 transmembrane receptors;ATP binding (.1.2) AT5G18360 66 / 8e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12020 65 / 1e-10 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT5G18350 64 / 2e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 64 / 3e-10 Disease resistance protein (TIR-NBS-LRR class) (.1) AT1G56520 63 / 5e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46470 63 / 5e-10 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 62 / 7e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007722 [exp] 162 / 4e-42 AT5G36930 225 / 3e-60 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023329 [exp] 152 / 5e-41 AT5G36930 134 / 5e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023487 [exp] 158 / 2e-40 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10034697 [exp] 150 / 4e-38 AT5G36930 300 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026011 [exp] 146 / 2e-36 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10008027 [exp] 135 / 2e-35 AT5G36930 197 / 5e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 138 / 8e-34 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 131 / 1e-31 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018309 [exp] 126 / 4e-31 AT1G27180 245 / 1e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 83 / 2e-16 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098800 [exp] 76 / 3e-14 AT4G16860 255 / 3e-75 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.001G307300 [exp] 75 / 1e-13 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097300 [exp] 72 / 3e-13 AT4G16860 272 / 8e-81 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G010800 [exp] 72 / 7e-13 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 71 / 1e-12 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G002500 [exp] 71 / 2e-12 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G004599 [exp] 70 / 3e-12 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G095932 [exp] 69 / 5e-12 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 69 / 7e-12 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10006907 pacid=23142119 polypeptide=Lus10006907 locus=Lus10006907.g ID=Lus10006907.BGIv1.0 annot-version=v1.0 ATGGAATGGAGAGAAGCTCTCCAAGAGGTTGGGAAAATGAAGGGATGGACCGTCAAAGACTCCGTCAGGCATGGTGCTGTAATAGATGAGATTTTCTCAA TTGTGAGCTCACTTCTGATGATGAATTACAAGTTGGTGTCTCATCAAGATTGTATTATTGGTATCAATTGTCATGTTGAGGAAGTGACAAGACTACTGGA TGTCGAGTCAAAAAGTGTGAAAATGGTTAGCGTTCATGGTATAGGCGGTATTGGTAAAACTACTATTGTGCAGGCTGTCTACGATAAGGTGCGTATAGAG TTCGATCGTTGTTGGTTCCTGGAAGATGTACGGAACACTTTAACAAGGAATGAGGTGTTTTGGCTTTGCAAAAGAAGGTCATCTCAGGCGTTCTTAAACA TGATGTCCGGGTTGAAGACTCTAGTCAAGGGATTCAACAAGCATGCTTCTGGAATGAATTATCCTCCAACAGATTATCTCACTCTAGCAGACAAATTTGT AGAAGCTGCTGTAGGTCTTCCGTTGGCGCTTAAGATTATAGGCTCACTTATGTTTCGCAAAGACCGAAAAGTTTGGGAAGAAAAGTTGATCCAATTAAAA GTACCTCCCAGTGAGGTTCAGAAGAGAGACCTTGGCGGAGGTATTGTTCATGACGAGAATGTTGAACACCCAGGTAAGCGCAACAGAATATGGTCTGTTG ATGATGCTTTGGATATGTTAAAACATAAACAGGGAACAGCTGATGTCAGAACTCTTAAAGTTGACTTAAATTGTGAGTTGTCGGAAGAAAAATTCAGGAA TTTGTCAAGGTTAAGATATCTTGAAGTGAAGAATGCAAGATTGAGGGGAGACTTTAGCAAGATTCTTCTGGATATACGGGAACTCCATATTGGCAACTTG AAATGTCTGAGGAAGCTTCGAATTATCGGCTGCGGAGTAACTACGCTAACAGGGAACGTCGAAATGCTAACAAATCTCGAAGCTATTGACTACTTAGGAT TTTCTAGAGCTGTTCTGGTGCTGCCAAAGCTCCCAACAAGCGTAAAGAAACTAGTGACCACATCTGTAGTTCCTAATCTTTCAGAGCTTAAGGACTTACG GCAACTGTACTTTAAAGATTGTCGTGGCGGGATAAGAATTCCGGGAGATATACGGAAGCTGTCGAAATTGAAGACTTTGATCATTAACTCTGCTCTCAAT AATACACTAGTGGTGACAGAGGAGGCCCGAAATGGGATCATCATGTTTAGTGCTCCTCTTGTTCTTCCGTCATCCCTCATTTTCCTCCATGTTGAGATTG CATATTGTGAGAACCCAATTGAACGAGGTTACAGGACTGGAAGGTTGGATTCGCTGGAGAATTTCTTCATATATGGTTGTGAGACCATTAGAAAGTTACC TGATCTGTCTCATCTCAAGAATCTGAAGAAGTTAAGTGTTTGGGGATGCCCACAATTAGCTGATGAAGTTATTGGACCCGAAGGTCTTCAAAAGCATTCA AAAATTGGACGTGTGGCAAAATACTATGTGAGTACAACTACTATAGCAACTAGCAAGGCAGCCACTGGGGACACGTTATATGAAAGAACAGAAACCGATT TGTTCACCAGAGGTCCAGTCCTAGTGGTGGTTGTTGTGGGCTCGTCTGATTCCGATGGGATCGCCGGCGATAGTGGCACCACCACCGTGGAGTCTGGAGC TGGTGCATCTGCGGTGGCTTTTGAACCTGACATAATCGGAACTTCAGCATAA
AA sequence Show only first row Show all	>Lus10006907 pacid=23142119 polypeptide=Lus10006907 locus=Lus10006907.g ID=Lus10006907.BGIv1.0 annot-version=v1.0 MEWREALQEVGKMKGWTVKDSVRHGAVIDEIFSIVSSLLMMNYKLVSHQDCIIGINCHVEEVTRLLDVESKSVKMVSVHGIGGIGKTTIVQAVYDKVRIE FDRCWFLEDVRNTLTRNEVFWLCKRRSSQAFLNMMSGLKTLVKGFNKHASGMNYPPTDYLTLADKFVEAAVGLPLALKIIGSLMFRKDRKVWEEKLIQLK VPPSEVQKRDLGGGIVHDENVEHPGKRNRIWSVDDALDMLKHKQGTADVRTLKVDLNCELSEEKFRNLSRLRYLEVKNARLRGDFSKILLDIRELHIGNL KCLRKLRIIGCGVTTLTGNVEMLTNLEAIDYLGFSRAVLVLPKLPTSVKKLVTTSVVPNLSELKDLRQLYFKDCRGGIRIPGDIRKLSKLKTLIINSALN NTLVVTEEARNGIIMFSAPLVLPSSLIFLHVEIAYCENPIERGYRTGRLDSLENFFIYGCETIRKLPDLSHLKNLKKLSVWGCPQLADEVIGPEGLQKHS KIGRVAKYYVSTTTIATSKAATGDTLYERTETDLFTRGPVLVVVVVGSSDSDGIAGDSGTTTVESGAGASAVAFEPDIIGTSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	0	1
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032019 [exp]	2.0	0.8443
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038761 [exp]	3.5	0.8044
AT3G18670			Ankyrin repeat family protein ...		Lus10016672 [exp]	12.3	0.8195
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	13.0	0.7922
AT2G38430			unknown protein		Lus10003276 [exp]	20.5	0.7827
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	22.2	0.8104
AT2G45670			calcineurin B subunit-related ...		Lus10009312 [exp]	28.3	0.7968
AT3G47570			Leucine-rich repeat protein ki...		Lus10006445 [exp]	28.8	0.7622
AT3G46620			zinc finger (C3HC4-type RING f...		Lus10012376 [exp]	29.1	0.7403
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	32.0	0.7972

Compare expression of checked genes

Lus10006907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.