Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57480 391 / 3e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 361 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 328 / 1e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 273 / 2e-88 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 270 / 1e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 270 / 3e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 254 / 1e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 254 / 1e-80 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28570 251 / 3e-80 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 248 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025479 [exp] 509 / 0 AT5G57480 487 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 274 / 2e-88 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 266 / 3e-85 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 257 / 1e-81 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 255 / 5e-81 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015349 [exp] 249 / 5e-79 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10037004 [exp] 246 / 2e-78 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 246 / 3e-78 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014498 [exp] 244 / 5e-77 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093600 [exp] 412 / 1e-142 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 390 / 8e-134 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G047950 [exp] 266 / 2e-85 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 263 / 1e-84 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 261 / 1e-83 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 260 / 2e-83 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 260 / 2e-83 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 260 / 4e-83 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 259 / 5e-83 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 259 / 2e-82 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10006968 pacid=23165419 polypeptide=Lus10006968 locus=Lus10006968.g ID=Lus10006968.BGIv1.0 annot-version=v1.0 ATGGATCCGGGGAAGAAGGTTGAAATTATGAACGATCTGAAGGATTTCGCCGGCGGTCAGGAGTTCTACCAGCGGACTGGCAGAGCTTGGAAGCGCGGTT ACTTGCTGTACGGACCTCCGGGGACGGGGAAATCGAGTATGATCGCCGCCATGGCGAATTTCTTGGGGTACGACATCTACGATCTGGAATTGACTGAAGT TCACAACAATTCCGAGCTCCGGAAGCTGCTGATGAAGACGAGCTCCAAGTCGATTATCGTGATTGAAGACATCGATTGCTCGATTAACCTCGGGAATCGG AAGAAGAGCAATCGGAACAGTAGCTATTACGATCCGACGGCGGAGATGCGACTCGGCGGCGGAGTAGGAGCAGCAGCTTCAGATTCCGACGGAGGAGGAA ACTCGATTACCCTCTCCGGATTGCTGAACTTCACCGACGGTCTCTGGTCGTGCTGCGGGAGCGAGAGGATCTTCGTCTTCACGACGAATCACGTCGAAAA GCTGGATCCAGCTCTGCTGAGAAGCGGGAGGATGGATATGCACATTTTCATGAGCTACTGTTCTTTCCCTGCATTGAAGATTCTGCTGAAGAATTACCTA GCTTTCACCGACGACGAGAAACACAGCCACGGCGACGTTTTGAGGAGGATCGAGGAGGTAATCGGAAAAGCGGAGATGACCCCGGCGGATGTGAGCGAGG TGCTGATTAAGAACCGGAGGGATGCGGTGAAGGCGGTGGCTGAGCTGCTGGAGGTTATGAAGCAGAGGGCGGAGAGGAATGGAGGCGGCGGCGGCGGCGG GAGGGGGAAGAGATTGAATGACGTTGAGGAAGAGGAAGAGCAGGAGAAGAGAGCTTTGGTTGAAGAGGAAGGATTCGGTTGTGATTATGATCAGAGCATT GGTGATGATGATGAAGAAGAAGAAGATTCTTTGGGGAAGAAGAAGAAGAAGAATGAATTGATTGATTGA
AA sequence Show only first row Show all	>Lus10006968 pacid=23165419 polypeptide=Lus10006968 locus=Lus10006968.g ID=Lus10006968.BGIv1.0 annot-version=v1.0 MDPGKKVEIMNDLKDFAGGQEFYQRTGRAWKRGYLLYGPPGTGKSSMIAAMANFLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSINLGNR KKSNRNSSYYDPTAEMRLGGGVGAAASDSDGGGNSITLSGLLNFTDGLWSCCGSERIFVFTTNHVEKLDPALLRSGRMDMHIFMSYCSFPALKILLKNYL AFTDDEKHSHGDVLRRIEEVIGKAEMTPADVSEVLIKNRRDAVKAVAELLEVMKQRAERNGGGGGGGRGKRLNDVEEEEEQEKRALVEEEGFGCDYDQSI GDDDEEEEDSLGKKKKKNELID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	0	1
AT5G57480			P-loop containing nucleoside t...		Lus10006967 [exp]	1.0	0.9505
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	2.0	0.8891
AT3G15630			unknown protein		Lus10017768 [exp]	3.0	0.7797
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	4.0	0.7688
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	10.7	0.7552
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	13.4	0.7566
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	15.9	0.7485
AT4G35510			unknown protein		Lus10016694 [exp]	17.2	0.6174
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	20.5	0.7176
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10032563 [exp]	21.6	0.7083

Compare expression of checked genes

Lus10006968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.