Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20140 754 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 754 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT5G58290 377 / 2e-128 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G19990 322 / 1e-106 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 320 / 6e-106 RPT6A AAA-type ATPase family protein (.1) AT1G09100 318 / 8e-105 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 317 / 2e-104 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G53750 304 / 2e-99 RPT1A regulatory particle triple-A 1A (.1) AT1G45000 303 / 2e-99 AAA-type ATPase family protein (.1.2) AT5G43010 302 / 5e-99 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019995 [exp] 778 / 0 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 759 / 0 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 655 / 0 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10022834 [exp] 654 / 0 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10015524 [exp] 629 / 0 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017762 [exp] 325 / 1e-107 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031492 [exp] 322 / 2e-106 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10029887 [exp] 321 / 3e-106 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10006854 [exp] 313 / 2e-104 AT5G58290 526 / 0.0 regulatory particle triple-A ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 765 / 0 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 758 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 376 / 9e-128 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 372 / 3e-126 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.008G144100 [exp] 325 / 1e-107 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.010G098300 [exp] 325 / 1e-107 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.005G025100 [exp] 320 / 7e-106 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.013G016800 [exp] 320 / 1e-105 AT3G05530 800 / 0.0 regulatory particle triple-A ATPase 5A (.1) Potri.002G031400 [exp] 306 / 1e-100 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 306 / 2e-100 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10006976 pacid=23165420 polypeptide=Lus10006976 locus=Lus10006976.g ID=Lus10006976.BGIv1.0 annot-version=v1.0 ATGGGACAAGGACCTTCAGGAATGGGCCGGCCTCCGGGAGACAAGAAAGGAGACGGCGACAACAAGAAGGAGAAGAAGTACGAGCCAGCCGCGCCGCCTT CCCGCGTCGGGCGGAAGCAGCGGAAGCAAAAGGGCTCCGAGACGTCGGCGAGGCTTCCGACGGTGACGCCTTTGACGAAGTGCAAGCTCCGCCTGCTGAA GATGGAGCGGATCAAGGATTACTTGCTGATGGAGGAAGAGTTCGTCTCCAATCAGGAGAGGCTGAAGCCTCAGGAGGAGAAGAACGACGAGGATCGTTCT AAGGTAGACGATCTCAGGGGATCTCCGATGAGCGTCGGGAATCTGGAGGAGCTGATTGACGAGAATCACGCTATTGTTTCTTCCTCGGTTGGTCCGGAGT ATTATGTTGGGATTTTGTCGTTCGTTGATAAGGACCAGATTGAGCCTGGCTGCGCAATTTTGATGCATAATAAGGTGCTTGCTGTTGTTGGACTACTTCA AGATGATGTTGACCCCATGGTTTCGGTAATGAAAGTTGAGAAAGCTCCACTACAATCATATGCAGACATTGGTGGGTTGGATGCCCAAATACAGGAGATT AAGGAAGCAGTGGAGCTCCCTCTTACGCATCCTGAACTCTATGAAGACATTGGTATCAAGCCTCCTAAGGGAGTCATCCTCTACGGGGAGCCAGGAACTG GAAAAACATTACTTGCAAAGGCTGTTGCAAACTCTACATCAGCGACTTTCCTCCGTGTGGTAGGAAGTGAACTAATCCAGAAGTATCTAGGCGACGGTCC AAAACTAGTTAGGGAGTTGTTTCGAGTTGCGGATGACCTTTCACCATCCATTGTCTTCATTGACGAAATCGATGCTGTTGGCACAAAGAGGTATGATGCA CATTCCGGCGGTGAGCGCGAGAACCAGAGAACTATGCTGGAGCCGCTGAACCAGTTGGATGGTTTCGACTCAAGGGGAGACGTGAAAGTGATTCTCGCAA CCAACCGAATCGAAAGCCTCGACCCCGCCCTGTTGCGTCCGGGACGAATCGACAGGAAGATTGAATTCCCTCTTCCAGACATCAAAACCCGGAGGCGTAT CTTCCAGATACATACATCAAGAATGACACTAGCGGATGATGTTAACTTGGAAGAGTTTGTGATGACCAAGGATGAGTTCTCGGGGGCCGACATCAAAGCA ATTTGCACCGAGGCTGGTTTACTTGCCTTGAGAGAGCGCCGTATGAAGGTAACTCATGCCGACTTCAAGAAGGCTAAGGACAAGGTGATGTTCAAGAAGA AGGAAGGTGTGCCGGAAGGACTATATATGTGA
AA sequence Show only first row Show all	>Lus10006976 pacid=23165420 polypeptide=Lus10006976 locus=Lus10006976.g ID=Lus10006976.BGIv1.0 annot-version=v1.0 MGQGPSGMGRPPGDKKGDGDNKKEKKYEPAAPPSRVGRKQRKQKGSETSARLPTVTPLTKCKLRLLKMERIKDYLLMEEEFVSNQERLKPQEEKNDEDRS KVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQIEPGCAILMHNKVLAVVGLLQDDVDPMVSVMKVEKAPLQSYADIGGLDAQIQEI KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA HSGGERENQRTMLEPLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKA ICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10006976 [exp]	0	1
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	15.1	0.8839
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	24.9	0.8575
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	27.1	0.8591
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	36.5	0.8546
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	37.7	0.8515
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10028321 [exp]	42.5	0.8536
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	51.7	0.8478
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	62.6	0.8239
AT2G02850		ARPN	plantacyanin (.1)		Lus10041850 [exp]	77.5	0.8349
AT1G52140			unknown protein		Lus10005478 [exp]	89.5	0.8335

Compare expression of checked genes

Lus10006976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.