Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57620 238 / 5e-77 MYB ATMYB36 myb domain protein 36 (.1) AT3G49690 231 / 1e-74 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G65790 229 / 9e-73 MYB AtMYB68 myb domain protein 68 (.1) AT4G37780 221 / 2e-70 MYB ATMYB87 myb domain protein 87 (.1) AT2G36890 210 / 2e-66 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G23000 200 / 3e-62 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT5G56110 172 / 2e-51 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT3G28470 164 / 2e-48 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1, MYB DOMAIN PROTEIN 35, Duplicated homeodomain-like superfamily protein (.1) AT5G15310 163 / 9e-48 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G28110 160 / 3e-47 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001316 [exp] 421 / 3e-149 AT5G57620 280 / 2e-93 myb domain protein 36 (.1) Lus10007248 [exp] 238 / 2e-76 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 238 / 2e-76 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10011606 [exp] 231 / 9e-74 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10039646 [exp] 230 / 2e-73 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10021428 [exp] 216 / 2e-68 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10016139 [exp] 216 / 2e-68 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10001394 [exp] 215 / 2e-68 AT5G57620 236 / 2e-76 myb domain protein 36 (.1) Lus10013830 [exp] 215 / 7e-68 AT5G57620 236 / 1e-75 myb domain protein 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170800 [exp] 252 / 8e-82 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.018G095900 [exp] 242 / 4e-78 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.002G113700 [exp] 238 / 1e-76 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 234 / 4e-75 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G234200 [exp] 224 / 6e-72 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.004G215100 [exp] 219 / 1e-69 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.018G058800 [exp] 217 / 1e-69 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.016G099200 [exp] 219 / 2e-69 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 219 / 2e-69 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.006G123400 [exp] 217 / 1e-68 AT5G57620 233 / 9e-75 myb domain protein 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10006978 pacid=23165425 polypeptide=Lus10006978 locus=Lus10006978.g ID=Lus10006978.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCATGCTGCGACAAGGCAAATGTGAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAAAGCTCAAATCTTACATCGAAACTCATGGCA CCGGCAACAACTGGATCGCCCTCCCTCAAAAGATCGGGTTGAAGAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGCTGAACTACTTGAGGCCAAACATCAA ACATGGTGGATTCTCTGAGGAAGAAGACAACATCATCTGCAGCCTCTACATCAGTATTGGAAGCAGGTGGTCAATTATTGCGGCGCAACTTCCGGGAAGG ACAGATAACGATATCAAAAACTACTGGAACACGAGGCTGAAGAAGAAGCTACTAGGAAGAAGGAAACAACAACAACAATATGTACCTTTGGCCACCACGG TGGCCGAGAATCATGATGATGATGATCATCATCAAAGCTCATCTGGATTGAGCAATTCAGCTATAGAGAGGCTGCAACTCCACATGAAGCTCCAACACCA AAACCAAAACCAAAACAACAACATGATGATCCCTAACTCACTTCTTTGGCCAAAGCTCCATCCTTTCCAAGAGAAGCTCCTCCTTCAAGCCATGAACGAC AATGACAACAATAACACCAACACTAGGCAAGTGCCTCTTTTGCCATCTCCAACTATGACCAAATCGCCATTGGTTGCAAACGGTGTCGAACCATCTGCAC TTATTGCTAGTGATGATTGCCAATTGGTTGGTGGTGATGATCATTTCATGAAGGAGTTTGAGATGAACACAAGCACCTTTTCATGGTGGTCGAACGAGTT CGAGGATGCGAATGAGTACAACCGATCGGGATCCTTCTCGTCCTCATCAACTAATAGTTCTTGGGAGTATGTTTTTTCTCCTCCTCCTTCAGAGGAGAAC GTCGTGTTTCCAGGATACGAGAACCAAATCCTCTGA
AA sequence Show only first row Show all	>Lus10006978 pacid=23165425 polypeptide=Lus10006978 locus=Lus10006978.g ID=Lus10006978.BGIv1.0 annot-version=v1.0 MGRAPCCDKANVKKGPWSPEEDAKLKSYIETHGTGNNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGR TDNDIKNYWNTRLKKKLLGRRKQQQQYVPLATTVAENHDDDDHHQSSSGLSNSAIERLQLHMKLQHQNQNQNNNMMIPNSLLWPKLHPFQEKLLLQAMND NDNNNTNTRQVPLLPSPTMTKSPLVANGVEPSALIASDDCQLVGGDDHFMKEFEMNTSTFSWWSNEFEDANEYNRSGSFSSSSTNSSWEYVFSPPPSEEN VVFPGYENQIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	2.0	0.9626
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	2.4	0.9595
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	2.6	0.9457
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	3.5	0.9527
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	3.5	0.9563
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	3.9	0.9254
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	4.2	0.9366
					Lus10025502 [exp]	4.9	0.9445
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	5.0	0.9462
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10034045 [exp]	6.0	0.9217

Compare expression of checked genes

Lus10006978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.