Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12500 394 / 1e-137 Nucleotide-sugar transporter family protein (.1) AT5G05820 281 / 6e-94 Nucleotide-sugar transporter family protein (.1) AT3G11320 281 / 1e-93 Nucleotide-sugar transporter family protein (.1) AT5G04160 273 / 7e-91 Nucleotide-sugar transporter family protein (.1) AT3G10290 268 / 6e-88 Nucleotide-sugar transporter family protein (.1) AT1G77610 122 / 4e-32 EamA-like transporter family protein (.1) AT1G21870 121 / 1e-31 GONST5 golgi nucleotide sugar transporter 5 (.1) AT3G14410 76 / 2e-15 Nucleotide/sugar transporter family protein (.1) AT1G53660 75 / 5e-15 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G25400 71 / 1e-13 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006684 [exp] 445 / 4e-159 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 291 / 2e-97 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 288 / 2e-96 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 272 / 3e-90 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 271 / 9e-90 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 270 / 4e-89 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 253 / 8e-83 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 253 / 2e-82 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 126 / 1e-33 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G118000 [exp] 481 / 1e-171 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 474 / 5e-169 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 283 / 8e-95 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 281 / 7e-94 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 278 / 1e-92 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 270 / 1e-89 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 266 / 4e-88 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 263 / 7e-87 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.001G289900 [exp] 124 / 4e-35 AT1G12500 149 / 3e-45 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 124 / 1e-32 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10007029 pacid=23168942 polypeptide=Lus10007029 locus=Lus10007029.g ID=Lus10007029.BGIv1.0 annot-version=v1.0 ATGGTGGAAGCTCAGTCATGGGCGACTCGCCGGATGAGCAACCCCCGCCTCCTCGACTCCTCCACCACCACCACCACCTCCGCCGCCGCCGATGACCAGG TCCTCGACATCCCCGCCACTCCCCCTGGCGACGTCCGCACCAACCACGCCTACGTCTCCTCCTACCTCTCCCCCTCCGTCCTCACCGCCTCCATCATCGC CTCCTGCTACGTCTCAATCAAGTTTCTCGAGGTAGTCCCCGTCCAGCACATCCTCTCTAGAAAACAGTTCTTCAAGATCTTCGCTCTGTCGGCGATCTTC TGCTTTTCAGTGGTCTGCGGGAATACTTCGCTTCGGTACCTCCCTGTCTCGTTCAATCAAGCGATCGGAGCTACGACTCCGTTTTTCACCGCGATTTTTG CGTTTTTGATTACTTGTAAGAAGGAATCGGCGGAGGTTTATGGCGCGTTGATGCCGGTTGTGTTTGGGATTGTTTTGGCGAGTAATAGTGAACCTCTGTT TCATCTGTTCGGGTTTCTTGTCTGCGTCGGGTCGACTGCGGGTCGGGCGTTGAAATCGGTTGTACAGGGGATTATATTGACATCCGAGGCGGAGAAGCTT CACTCGATGAATCTGTTGCTATACATGGCGCCGATGGCGGCGATGATTCTGCTGCCGTTGACGCTCTACATCGAAGGTAATGTGGCGGCGGTGACTCTGG AGAAGGCGAAAGGAGATCCGTACATTGTCTTCTTGCTGATTGGGAACGCGACGGTGGCGTATCTGGTGAACCTGACGAATTTCCTGGTGACGAAGCACAC GAGTGCTCTGACGCTGCAGGTCCTGGGGAACGCGAAGGCGGCGGTGGCGGCGGTTGTTTCGGTGCTGATATTCAGGAACCCGGTAACGGCGATGGGGATG GCGGGATTCGCCGTTACGATTATGGGCGTTGTGCTCTACAGCGAGGCCAGGAAGAGATCTAAGGTCACGATGCATTGA
AA sequence Show only first row Show all	>Lus10007029 pacid=23168942 polypeptide=Lus10007029 locus=Lus10007029.g ID=Lus10007029.BGIv1.0 annot-version=v1.0 MVEAQSWATRRMSNPRLLDSSTTTTTSAAADDQVLDIPATPPGDVRTNHAYVSSYLSPSVLTASIIASCYVSIKFLEVVPVQHILSRKQFFKIFALSAIF CFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYGALMPVVFGIVLASNSEPLFHLFGFLVCVGSTAGRALKSVVQGIILTSEAEKL HSMNLLLYMAPMAAMILLPLTLYIEGNVAAVTLEKAKGDPYIVFLLIGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTAMGM AGFAVTIMGVVLYSEARKRSKVTMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	0	1
AT2G20820			unknown protein		Lus10033715 [exp]	1.4	0.8989
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	1.7	0.8989
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	3.2	0.8990
AT1G69430			unknown protein		Lus10036796 [exp]	4.5	0.8987
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	4.6	0.8866
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	5.5	0.8935
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	6.0	0.8805
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041278 [exp]	7.2	0.8501
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10002221 [exp]	8.0	0.8477
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	8.8	0.8902

Compare expression of checked genes

Lus10007029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.