Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 317 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 305 / 7e-90 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19510 287 / 2e-84 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G51630 283 / 2e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41750 271 / 1e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 270 / 3e-77 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G49140 266 / 3e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 266 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 263 / 6e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G16950 263 / 3e-75 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015648 [exp] 933 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 818 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015650 [exp] 813 / 0 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 682 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017418 [exp] 668 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10012246 [exp] 623 / 0 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017419 [exp] 611 / 0 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 581 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 576 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 412 / 3e-130 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 399 / 5e-125 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 393 / 6e-122 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 383 / 3e-118 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 370 / 9e-115 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 375 / 1e-114 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 357 / 1e-109 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070300 [exp] 340 / 3e-105 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 343 / 2e-104 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 339 / 2e-104 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10007030 pacid=23168960 polypeptide=Lus10007030 locus=Lus10007030.g ID=Lus10007030.BGIv1.0 annot-version=v1.0 ATGGCTGCAACTTCTTCTTCTTCTTCTTCTGGATCTCCGTACATCGGAGAATGGGAGTACGACGTTTTCTTGTGTTTTCGAGGTGACGACACACGATATG GTTTCACCAGCCACCTCATGTCCGCTTTATCAGACCGACAAATCAGAACCTTCATTGACTACAAGCTCCGAAAAACCGAAAGCATCAACGAGCTGATCTC AATTCTTCAGAGATGTGCTCTCTCCGTGGTGGTTTTCTCCGAGAAATTTGCGGATTCAGTCTGGTGCTTGAAAGAGGTGGTTACCATGGCCCGAAGGATG AAACAAACCGGGCACAGGGTTCTTCCGGTTTTCTATAAAGTGGATCCGCACGATGTGACCGACGAGTTTGGAAGCTATGCGGCTACCATCGATCGTGAAT ATAAAGGTAGAAATACTTACTTGGAGGATAAAAAGAGATGGATGGATGCTCTGAACGCTGTAGCTAACTGTGCTGGCCAGACCTCACGTACTATCAAAAT TGAATCTGAATTGATTAAGGCGGTTGTGAAAGATGTTCAGAGGCAACTAATAGACACATCACCGAGTATAAAGTTGGCTAACTTGGTTGGTATGGGATCA CGAATTCTCGAGGTTGAGCGATTGTTAGCTAGGGATACATTAGATGATACTCGCATCATTGGGTTATGGGGAATGGGTGGCGTGGGAAAAACAATTCTAG CCAAAGCTTGTTATGAAAGGATAATTACGTCCACAAAAGGAATCAAACATCATTTTGTTGGGAGCATTAGTGAGAGATGTGGGAGAAGACACGGGGTTGA AGGAATAGTGAATGAGCTTTACTCAAAATTGTTGTCGGAGAAGAACATTAGTCGTCAAGATTTAGATATTACTTACCGGAGGGGGCGCCTTTCTCGCTCT AAGGTGTTCATTGTTCTCGACGATGTGGAGACATCGTCACAGTTGGAACAAATCCTTTTGGGAGATGTGGCCACGAGTCTCGATAATCTCTTCGCTCCGG GGAGTAGAATTATTGTGACAACAAGGGATAAAAGAGTTCTGGATTATGCGAATGCGATGGTATATGCTGTTGCTAATTTAAGTGACAGTGAATCCATTCA ATTATTTAGCCTACGAGCTTTCAGAAAACATCGCCCTCCCCGTGATTGGGAGGCCCTGTCCTGTCTTGCAGCATCATATTGCAAGGGAAACCCCTTGTTA CTCAGAGTCCTTGGGGGCACATTGTTCAACCAGGATAAATATTATTGGCGAAGTTTTCTAAGCGAGCTGAGGTTGAGTCGGAATCATGAAGTTCATGATA TTCTTGAAAGAAGTTGCAATAAATTGGGAGTTGAGGAACAGAGAATATTTCTAGATGTCGCGTGTTTCCTCCACGGAATATCGAGATCTCGATTGATAGT GTATATGTCAACCATGCATCCCTCTGCATACGCTAAGGTGAAGGATCTGATTGATAAAACCTTTTTAGTTTGCGAAGGGGAGAATATTGAAGTGCATGAT TTGCTCAAGGAAATGGCTTGGAATATAGTCAACAAGGAACCGAACATTAGGAAACGAAGCAGGTTAGTCGATCCTGATGATATTCACAAATTACTGACAA CTCGAGATGTTAAAAGCTGGACAACCTCATTTTTCAACCTATTTAAAACCATAGAAATGGTGGCTCTTCCAGGAAGGAAGAAAGCAAAACTGGTGGACAT TCGTGATCCATTAGAGGAGGAACATAGAGCAACTGAAGGCATAAGCTTGGATCTCGATGTAGCCAAAGAGATGTACTTAAAATCAAATGTCTTTGATGGT ATGAATTCTCTTACATTCCTCAAGCTTTCGAGCTACGGGGCAGGGAAGAACAAAGTTCATTTGCCTTATGGTGGACTTAACTCGCTTCCTGGCGGGTTAA GATGGTTGCAGTGGGATGGGTATCCTTCAAGATTTCTACCATCAAAATTTTATCCACAACACCTTGTCCATCTCATTATACGCTACAGTCCAATTCAAAG ATGCTGGGAAGGATATGATCAAGTAAGTAACTGA
AA sequence Show only first row Show all	>Lus10007030 pacid=23168960 polypeptide=Lus10007030 locus=Lus10007030.g ID=Lus10007030.BGIv1.0 annot-version=v1.0 MAATSSSSSSGSPYIGEWEYDVFLCFRGDDTRYGFTSHLMSALSDRQIRTFIDYKLRKTESINELISILQRCALSVVVFSEKFADSVWCLKEVVTMARRM KQTGHRVLPVFYKVDPHDVTDEFGSYAATIDREYKGRNTYLEDKKRWMDALNAVANCAGQTSRTIKIESELIKAVVKDVQRQLIDTSPSIKLANLVGMGS RILEVERLLARDTLDDTRIIGLWGMGGVGKTILAKACYERIITSTKGIKHHFVGSISERCGRRHGVEGIVNELYSKLLSEKNISRQDLDITYRRGRLSRS KVFIVLDDVETSSQLEQILLGDVATSLDNLFAPGSRIIVTTRDKRVLDYANAMVYAVANLSDSESIQLFSLRAFRKHRPPRDWEALSCLAASYCKGNPLL LRVLGGTLFNQDKYYWRSFLSELRLSRNHEVHDILERSCNKLGVEEQRIFLDVACFLHGISRSRLIVYMSTMHPSAYAKVKDLIDKTFLVCEGENIEVHD LLKEMAWNIVNKEPNIRKRSRLVDPDDIHKLLTTRDVKSWTTSFFNLFKTIEMVALPGRKKAKLVDIRDPLEEEHRATEGISLDLDVAKEMYLKSNVFDG MNSLTFLKLSSYGAGKNKVHLPYGGLNSLPGGLRWLQWDGYPSRFLPSKFYPQHLVHLIIRYSPIQRCWEGYDQVSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10007030 [exp]	0	1
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	4.1	0.6213
AT1G11330			S-locus lectin protein kinase ...		Lus10038411 [exp]	7.1	0.6126
AT1G18310			glycosyl hydrolase family 81 p...		Lus10038600 [exp]	17.3	0.6158
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	30.1	0.5862
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	32.4	0.5857
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	41.6	0.5726
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	43.3	0.5826
					Lus10004306 [exp]	65.1	0.5354
					Lus10011588 [exp]	75.6	0.5570
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	78.7	0.5632

Compare expression of checked genes

Lus10007030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.