Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63380 335 / 3e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 335 / 5e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G55290 333 / 2e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 332 / 1e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 326 / 2e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G17845 322 / 3e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G01980 110 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G24360 94 / 7e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 89 / 9e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 82 / 5e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007039 [exp] 446 / 1e-159 AT3G55290 369 / 3e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006698 [exp] 426 / 5e-152 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006699 [exp] 402 / 3e-142 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006695 [exp] 190 / 2e-61 AT3G55310 107 / 9e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012548 [exp] 104 / 3e-26 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10036980 [exp] 101 / 1e-24 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041545 [exp] 99 / 4e-24 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10015821 [exp] 95 / 1e-21 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 82 / 4e-18 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035200 [exp] 361 / 4e-126 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G056100 [exp] 106 / 1e-26 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 103 / 2e-25 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G067332 [exp] 100 / 1e-24 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.001G327800 [exp] 94 / 2e-22 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.004G200100 [exp] 94 / 2e-22 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 92 / 1e-21 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 91 / 3e-21 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 89 / 2e-20 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 87 / 7e-20 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10007038 pacid=23168932 polypeptide=Lus10007038 locus=Lus10007038.g ID=Lus10007038.BGIv1.0 annot-version=v1.0 ATGGCTAACAAGGTGTCAGCCCAGCTGGAGCCATGGTGCAACTTGCCAGACAAAGTGGTTCTTGTAACCGGTGCTTCTTCAGGTTCAGGCCGAGAATTTG CCCTCGATCTAGCCAAAGCTGGGTGCAGGATCGTGGCTGCTGCTAGGCGTATTGACCGCCTACAATCTCTCTGTAACGAGATCAATACGCTCCAGTTTCC AACCAATGCTTCTTCATCTGCCGGAGAGACAAGTGGTCCACGTGCAGTAGCAGTGGAGCTGGATGTGTCAGCAGACAGGGCTGCAATTGATAAGTCGATA CAGAGCTGTTGGGAAGCCTTTGGAAGAATAGATGTATTGGTCAACAATGCTGGCATTACTGGTAACACAAAGAACTCATTAGATTTGCCTGAAGAGGAAT GGAATCATTTGATCAAGACAAATCTGACAGGAACTTGGTTGGTTTCTAAGTCAGTCGGGTCACGGATGCGTGATGCAAAGCTGGGAGGTTCCATAATCAA TATTTCGTCGATCTTTGGTCTTAATCGTGGTTATACACCTGGAGTTGTCGCTTATGCTTCTTCGAAGACGGGAATAAATGCCATGACGAAGGTGATGGCG CTGGAGTTGGGAGTGCACAAGATCAGAGTTAACTCGCTATCTCCAGGACTGTTCAAATCCGAGATCACCGAAAGTCTCATGAAGATGCCCTGGCTGGCTC GCTATATGGAGAAGATGGTCCCAATACCAGAAATTGCACCTGTAAACCCAGGATTGACATCAATCATCCGGTACCTCATCCATGAGTCGTCCCAGTATGT GACAGGCAATGTCTTCACCATCGACTCTGGAACCACCTTACCAGGTCTCGCCATTTACTCATCGCTCTGA
AA sequence Show only first row Show all	>Lus10007038 pacid=23168932 polypeptide=Lus10007038 locus=Lus10007038.g ID=Lus10007038.BGIv1.0 annot-version=v1.0 MANKVSAQLEPWCNLPDKVVLVTGASSGSGREFALDLAKAGCRIVAAARRIDRLQSLCNEINTLQFPTNASSSAGETSGPRAVAVELDVSADRAAIDKSI QSCWEAFGRIDVLVNNAGITGNTKNSLDLPEEEWNHLIKTNLTGTWLVSKSVGSRMRDAKLGGSIINISSIFGLNRGYTPGVVAYASSKTGINAMTKVMA LELGVHKIRVNSLSPGLFKSEITESLMKMPWLARYMEKMVPIPEIAPVNPGLTSIIRYLIHESSQYVTGNVFTIDSGTTLPGLAIYSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	1.0	0.9879
					Lus10015758 [exp]	1.4	0.9708
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	2.0	0.9670
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	2.2	0.9664
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	2.6	0.9625
AT4G33740			unknown protein		Lus10020507 [exp]	2.8	0.9605
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	3.5	0.9535
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	3.5	0.9679
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	3.5	0.9654
AT2G14210	MADS	AGL44, ANR1	ARABIDOPSIS NITRATE REGULATED ...		Lus10028214 [exp]	3.6	0.9522

Compare expression of checked genes

Lus10007038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.