Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63380 347 / 2e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55290 345 / 5e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G62610 345 / 5e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT2G17845 345 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46170 343 / 5e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 338 / 4e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G01980 108 / 1e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT1G24360 92 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 84 / 7e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 79 / 1e-16 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006698 [exp] 466 / 3e-167 AT1G63380 385 / 5e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007038 [exp] 446 / 3e-159 AT1G63380 357 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006699 [exp] 432 / 2e-154 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006695 [exp] 167 / 3e-52 AT3G55310 107 / 9e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 98 / 4e-23 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012548 [exp] 96 / 6e-23 AT3G01980 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10041545 [exp] 92 / 2e-21 AT3G01980 346 / 6e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Lus10015821 [exp] 91 / 3e-20 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 82 / 5e-18 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035200 [exp] 387 / 2e-136 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G056100 [exp] 100 / 3e-24 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 97 / 4e-23 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G067332 [exp] 92 / 1e-21 AT3G01980 323 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.004G200100 [exp] 92 / 2e-21 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G327800 [exp] 91 / 2e-21 AT3G01980 323 / 6e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) Potri.005G106100 [exp] 86 / 4e-19 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 79 / 9e-17 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 78 / 1e-16 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 77 / 3e-16 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10007039 pacid=23168936 polypeptide=Lus10007039 locus=Lus10007039.g ID=Lus10007039.BGIv1.0 annot-version=v1.0 ATGGCTAGCGAGGTGTCAGCCCAGCTGGAGCCACGGTGCAACTTACCAGACAAAGTAGTCCTTGTAACCGGTGCTTCTTCAGGTATAGGCCGAGAGTTCT GCCTTGACCTAGCCAAAGCTGGGTGCAAGATTGTGGCGGCTGCTAGGCGTATTGACCGCCTACAATCTTTGTGCAAAGAGATCAATATGATTCAGTTTCC GACCAGTGCTTCTTCATCTGCCGGAGAGCTAAGTGGCACACGTGCTGTGGCCGTGGAGCTGGATGTGTCCGCAGACGGGGTTGCAATTGATAAGGCTGTG CAGAGCTCTTGGGAAGCATTTGGAAGGATAGATGTGTTGATCAACAATGCTGGCATTAGTGGTAACTCGAAGAACTCGTTAGATTTGTCTGAAGAGGAAT GGAATCATTTGATCAAGACAAATTTGAAAGGAACTTGGTTGGTTTCCAAGTCAGTTGGGATACGGATGCGTGATGCAAAGCTTGGAGGTTCCATAATCAA TATCTCATCGATCTTTGGTCTTAATCGTGGCTATGCACCCGGAGTTGTCGGTTATGCTTCTTCGAAGACCGGTGTAAATTCCATGACGAAGGTGAATGTG CCTCTATTTTCAAATGCATCGACTTTCATGGTGATGGCTTTGGAGTTGGGGGTTTACAAGATCAGAGTTAACTCTATATCACCTGGACTGTTCAAATCCG AGATCACAGAAAGTCTCATGAATAAACCCTGGATGACTACCGTTGCTGAGAAGACGGTCCCACTACGAACATTTGGAACTGTAGATCCAGCATTGACATC ACTCGTTCGATACCTCATCCATGATTCAACCCAGTATGTGACGGGCAATATTTTCATTGTAGATGCCGGAACAACCTTATCAGGTGTCCCTATTTTCTCA TCACTCTGA
AA sequence Show only first row Show all	>Lus10007039 pacid=23168936 polypeptide=Lus10007039 locus=Lus10007039.g ID=Lus10007039.BGIv1.0 annot-version=v1.0 MASEVSAQLEPRCNLPDKVVLVTGASSGIGREFCLDLAKAGCKIVAAARRIDRLQSLCKEINMIQFPTSASSSAGELSGTRAVAVELDVSADGVAIDKAV QSSWEAFGRIDVLINNAGISGNSKNSLDLSEEEWNHLIKTNLKGTWLVSKSVGIRMRDAKLGGSIINISSIFGLNRGYAPGVVGYASSKTGVNSMTKVNV PLFSNASTFMVMALELGVYKIRVNSISPGLFKSEITESLMNKPWMTTVAEKTVPLRTFGTVDPALTSLVRYLIHDSTQYVTGNIFIVDAGTTLSGVPIFS SL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55290			NAD(P)-binding Rossmann-fold s...		Lus10007039 [exp]	0	1
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	2.4	0.9170
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	6.6	0.9168
AT4G14600			Target SNARE coiled-coil domai...		Lus10008723 [exp]	10.0	0.8866
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	11.6	0.9156
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	14.7	0.9051
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	15.5	0.8954
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	17.3	0.9135
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	17.5	0.9075
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	19.4	0.8958
AT1G64385			unknown protein		Lus10032376 [exp]	19.6	0.8941

Compare expression of checked genes

Lus10007039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.