Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13620 149 / 4e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 126 / 8e-35 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT4G39780 124 / 9e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 122 / 2e-32 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT1G36060 121 / 3e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 115 / 1e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 113 / 4e-29 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT5G65130 107 / 1e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G28140 103 / 8e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16770 97 / 8e-24 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016669 [exp] 400 / 1e-141 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 122 / 2e-32 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 119 / 2e-32 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 119 / 2e-32 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10020913 [exp] 122 / 3e-32 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 122 / 3e-32 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 121 / 5e-32 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10039809 [exp] 112 / 2e-28 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10018578 [exp] 111 / 5e-28 AT2G20880 195 / 3e-59 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055400 [exp] 150 / 3e-42 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 148 / 3e-41 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.005G168700 [exp] 126 / 7e-34 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 124 / 5e-33 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 123 / 1e-32 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 122 / 3e-32 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.013G135600 [exp] 112 / 4e-28 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 110 / 3e-27 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 94 / 2e-22 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 93 / 2e-22 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10007124 pacid=23139751 polypeptide=Lus10007124 locus=Lus10007124.g ID=Lus10007124.BGIv1.0 annot-version=v1.0 ATGGAAAATTTCATGTTCAAAGACCTCCAACTGTCTTGTCATCATCTTCGTGGAGGAGGAGGAGGAGGAACATCAAATCACTCTTTTCTTCTGGATCCAA CTATTTGGACCTCTTCTATAACTCAACCTCATAATTGGGCTCCTGCAACGGCAGCAGCAGCAGCGGATCATCAAATTCAGTCATCAGCTCCGATGAACAA TCCTGTAAACTTCCTTGAATCATTCCCCAACCTGATGAAAGTTATGGAGCCCATCTCACCGGATTCTCCTTCTTCAGCAGCAAACAACTTCTCCAGCCTC ACTCTGTTTTCACTTCCCCTGTTTTCTCCGGCGGAGAAAATTGTCCAGTCGCCGTCGTTTCTCCCAAGCAAGAGGTGGCTGAGTGCCAGTAAGACGCAGC AGATGAAGTACAAGGCAGGTGGCAGGAGCGTGTCATCGTCGGAAAAGGTGTTCAGAGGGGTTCGGCAGAGGCATTGGGGAAAATGGGTGGCGGAGATAAG GTTACCAAGGAATAGGACGAGGGTTTGGTTGGGGACGTTCGATACAGGGGAAGAGGCGGCGATGGCGTACGATACGGCAGCGTATATGCTAAGAGGGAAA TACGCACATTTGAATTTCCCAGAACTAAAGCACCAGCTCAAGGCCAATGGAACCACGGCTGCTCTTCTGGAAGCCAAGCTGCAAGCGATGAAGAAGAAGA AGAAGGAATTGACGGAGCAGCAGAATCAGGCGGAGAAGGAAGAACCAGTAGTGAATTCTGACAATAATGTTGCGGGGGTTCAATTGAGTAGAATGCCTTC GTTGGATATGGACATGATATGGGATGCTCTTCTAGTTCGTGACTCCTCTTCCTGA
AA sequence Show only first row Show all	>Lus10007124 pacid=23139751 polypeptide=Lus10007124 locus=Lus10007124.g ID=Lus10007124.BGIv1.0 annot-version=v1.0 MENFMFKDLQLSCHHLRGGGGGGTSNHSFLLDPTIWTSSITQPHNWAPATAAAAADHQIQSSAPMNNPVNFLESFPNLMKVMEPISPDSPSSAANNFSSL TLFSLPLFSPAEKIVQSPSFLPSKRWLSASKTQQMKYKAGGRSVSSSEKVFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTGEEAAMAYDTAAYMLRGK YAHLNFPELKHQLKANGTTAALLEAKLQAMKKKKKELTEQQNQAEKEEPVVNSDNNVAGVQLSRMPSLDMDMIWDALLVRDSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007124 [exp]	0	1
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	4.1	0.9521
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Lus10014569 [exp]	6.5	0.9323
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	7.1	0.9394
AT4G33590			unknown protein		Lus10041131 [exp]	7.3	0.9471
AT3G07425			unknown protein		Lus10009587 [exp]	7.7	0.9378
AT3G49950	GRAS		GRAS family transcription fact...		Lus10011076 [exp]	8.5	0.9348
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	12.4	0.9427
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	13.6	0.9406
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	14.4	0.9383
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021045 [exp]	16.0	0.9320

Compare expression of checked genes

Lus10007124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.