Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 345 / 3e-119 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 335 / 2e-115 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 206 / 6e-64 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G04030 202 / 3e-62 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 181 / 6e-54 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G12730 170 / 2e-51 GARP Homeodomain-like superfamily protein (.1) AT1G69580 167 / 2e-49 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 166 / 4e-49 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G45580 164 / 1e-48 GARP Homeodomain-like superfamily protein (.1) AT4G28610 143 / 2e-39 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016676 [exp] 528 / 0 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 205 / 8e-63 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 202 / 8e-62 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10001844 [exp] 203 / 1e-61 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 202 / 2e-61 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10038735 [exp] 179 / 5e-55 AT3G24120 177 / 8e-55 Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 179 / 3e-54 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 176 / 4e-53 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10036758 [exp] 176 / 6e-53 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314800 [exp] 474 / 3e-170 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 468 / 2e-167 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.016G001200 [exp] 204 / 6e-64 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 205 / 7e-63 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.013G060200 [exp] 205 / 1e-62 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.008G081800 [exp] 196 / 6e-60 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 193 / 4e-59 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 185 / 1e-56 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.008G087600 [exp] 179 / 4e-54 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.003G100100 [exp] 178 / 5e-54 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007132 pacid=23139758 polypeptide=Lus10007132 locus=Lus10007132.g ID=Lus10007132.BGIv1.0 annot-version=v1.0 ATGTACTCTGCCTTACACTCTATGCCGCTTGACGGAAGTATTCTAGGAGGAGGAGGTGGAGGAGGAGCAGCTGGGCACGTGGACTACCAGCGCTCGTTGG ATGGTACCAATCTCCCTGGAGATGCGTGCTTGGTTCTCACCACGGATCCAAAGCCAAGGCTCCGCTGGACTACCGAGCTCCACGACCGATTCGTCGACGC CGTTACTCAGTTGGGCGGTCCTGACAAAGCAACTCCTAAGACTATAATGAGGACAATGGGGGTTAAAGGCCTGACTCTTTATCACTTGAAATCCCACCTA CAGAAATACAGGTTGGGAAGGCAATCCTGCAAGGAAACGACTGAGAGCTCTAAGGATGTTGGCATTGCTGCATCTATTGCAGAAAGTCAGGACACTGGCT CGTCTACATCAACATCATCTAGAATGGCTGCACAAGATCTTAATGACGGTTACCAGGTGACTGAGGCTTTGCGTGTACAGATGGAAGTTCAAAGACGACT ACATGAACAGCTAGAGGTGCAACGCAGACTCCAACTAAGGATTGAAGCCCAGGGGAAATATCTACAGTCAATACTGGAGAAAGCCTGCAAAGCTCTGAAC GACCAGGCAGTTGCAACTGTTGGACTTGAAGCAGCGAGGGAGGAGCTTTCAGAATTAGCAATTAAAGTTTCCAATGAATGTCAAGGAATGGCACCCATGG ACACCATAAAGATGCCGACTTTACCCGAACTTGCTGCTGCTTTAGAGAGCAGAAGTGCCTCCAATATGCCTGCTCGAATAGGGGACTGCTCCACTGAGAG TTGCTTGACTTCAATTGGGAGTCCAGTTTCTCCCATGGGTATGTCTCCACAAGCTGCTGCTGCTGTTGCTGCCATGAAGAAAAGACCAAGGTCTGTCTTT GGCAATGGAGATTCACTCCTGTTTGATGGCAGCATGCGTCAAGAAGTCGAATGGATGATGCATAACATGGCATGA
AA sequence Show only first row Show all	>Lus10007132 pacid=23139758 polypeptide=Lus10007132 locus=Lus10007132.g ID=Lus10007132.BGIv1.0 annot-version=v1.0 MYSALHSMPLDGSILGGGGGGGAAGHVDYQRSLDGTNLPGDACLVLTTDPKPRLRWTTELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL QKYRLGRQSCKETTESSKDVGIAASIAESQDTGSSTSTSSRMAAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN DQAVATVGLEAAREELSELAIKVSNECQGMAPMDTIKMPTLPELAAALESRSASNMPARIGDCSTESCLTSIGSPVSPMGMSPQAAAAVAAMKKRPRSVF GNGDSLLFDGSMRQEVEWMMHNMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10007132 [exp]	0	1
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	1.4	0.9320
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	2.0	0.9195
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	2.4	0.9280
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	9.2	0.9198
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	9.5	0.8772
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10034485 [exp]	10.6	0.8668
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	13.6	0.9022
AT3G22520			unknown protein		Lus10041202 [exp]	16.5	0.8919
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	20.7	0.8922
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	23.0	0.8641

Compare expression of checked genes

Lus10007132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.