Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49630 701 / 0 AAP6 amino acid permease 6 (.1) AT1G58360 677 / 0 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 629 / 0 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G09220 560 / 0 AAP2 amino acid permease 2 (.1) AT1G77380 550 / 0 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 549 / 0 AAP4 amino acid permease 4 (.1) AT1G44100 544 / 0 AAP5 amino acid permease 5 (.1) AT5G23810 397 / 1e-134 AAP7 amino acid permease 7 (.1.2) AT5G40780 171 / 7e-48 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 158 / 5e-43 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028236 [exp] 839 / 0 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10029707 [exp] 565 / 0 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 561 / 0 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 559 / 0 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 551 / 0 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 550 / 0 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10037150 [exp] 548 / 0 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 538 / 0 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10035663 [exp] 526 / 0 AT1G10010 569 / 0.0 amino acid permease 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112100 [exp] 732 / 0 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.009G085000 [exp] 616 / 0 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.005G068900 [exp] 571 / 0 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.009G133600 [exp] 564 / 0 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.007G100100 [exp] 561 / 0 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079400 [exp] 555 / 0 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 553 / 0 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 551 / 0 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 550 / 0 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 544 / 0 AT1G77380 756 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10007235 pacid=23182146 polypeptide=Lus10007235 locus=Lus10007235.g ID=Lus10007235.BGIv1.0 annot-version=v1.0 ATGGCGAACAATAGCAACAACAAGAACACCTTGTACGTAGAACAACATCACCACGACCCAGAAGTAGTATACCACCACAGCGACCAAACCCGCCTCGACC ATGACGACGACGGCCGCCCCAAGCGCACAGGAACATGGGTGACGGCGAGTGCACACATAATAACGGCGGTGATAGGGTCAGGGGTGCTATCACTCGCCTG GGCCATAGCTCAGCTGGGTTGGGTGGCCGGACCGGTGGTGCTTATGGCATTCTCCTTCATCACTTTATACACCTCCACACTCCTAGCCGATGCATACAGG TCGCCCGACCCTGTTTCCGGCAAGCGTAACTACACCTACATGGACGCTGTGCGTGCAGGTGTCGGTGGCAAGAAAGTCCAGCTCTGTGGGATTGCTCAGT ACGGTAACTTGGTCGGGATCACCGTCGGTTACACTATCACCGCCTCCATCAGTATGGTAGCGGTGAAGAGATCGAACTGTTTCCACAAAGAAGGGCATGG GGCGGACAAATGCCACGTGTCGAACAATCCATACATGGTGATATTTGGGTGTATCCAGTTAGTGCTCAGCCAGATCCCTAATTTCCATAAGCTGTCGTGG CTCTCCATTTTGGCTGCCGTCATGTCTTTTGCTTATTCCATTATCGGCCTTGGTCTCTCCATCGCCAAAGTTGCAGGAGGGGATACTGGAAAGACGACGT TAACGGGAGTGAGGGTAGGAGTAGACTTGTCAGCAGCTCAGAAAGTGTGGAGGACGTTCCAAGCCATAGGAGATATCGCATTTGCATATGCATTCTCCAC CGACACTCTGAAATCGAGCCCACCGGAGAACAGATCAATGAAAAGGGGAAGCCTTGTCGGCATTATGACCACCACTCTGTTCTACGTTCTATGTGGCTGC GTAGGATATGCTGCCTTTGGTAACGACGCACCTGGCAATTTCCTTACTGGGTTCGGATTCTACGAGCCTTTCTGGTTGATAGACTTGGCCAACATCTGCA TTGCTATCCATCTCGTTGGTGCCTACCAGGTCTTCTGCCAACCGATTTACAGCTTTGTAGAGAGCAGCTGTCAACGAAAGTGGCCGGAGAACAAGTTCAT CACAAAGGAGCATCCCGTAACAATCCCATTCTGTCGAGGAGCCTACTACAGCATCAACTTGTTCAGATTGGTGTGGAGGTCCGCTTATGTTGTAGTGACA GTAGTCTTGGCCATGATCTTCCCATTCTTCAACGACTTCCTCGGTCTCATCGGGGCAGCATCCTTCTGGCCATTGACGGTGTATTTCCCAATAGAGATGT ACATTGCCAGGGCTAAAATCCCAAAGTACTCTGTTACGTGGACGTGGCTGCAAATATTAACTTGGACATGCCTGGCTGTCTCACTTCTTGCTGCAGCCGG ATCGGTGGAAGGTCTTATCCAGTCTGTCAAGACTTACCAACCTTTCCAAAGTGGAGAATAA
AA sequence Show only first row Show all	>Lus10007235 pacid=23182146 polypeptide=Lus10007235 locus=Lus10007235.g ID=Lus10007235.BGIv1.0 annot-version=v1.0 MANNSNNKNTLYVEQHHHDPEVVYHHSDQTRLDHDDDGRPKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPVVLMAFSFITLYTSTLLADAYR SPDPVSGKRNYTYMDAVRAGVGGKKVQLCGIAQYGNLVGITVGYTITASISMVAVKRSNCFHKEGHGADKCHVSNNPYMVIFGCIQLVLSQIPNFHKLSW LSILAAVMSFAYSIIGLGLSIAKVAGGDTGKTTLTGVRVGVDLSAAQKVWRTFQAIGDIAFAYAFSTDTLKSSPPENRSMKRGSLVGIMTTTLFYVLCGC VGYAAFGNDAPGNFLTGFGFYEPFWLIDLANICIAIHLVGAYQVFCQPIYSFVESSCQRKWPENKFITKEHPVTIPFCRGAYYSINLFRLVWRSAYVVVT VVLAMIFPFFNDFLGLIGAASFWPLTVYFPIEMYIARAKIPKYSVTWTWLQILTWTCLAVSLLAAAGSVEGLIQSVKTYQPFQSGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	2.8	0.9865
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	3.7	0.9845
AT1G21326			VQ motif-containing protein (....		Lus10012286 [exp]	4.9	0.9833
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	6.0	0.9624
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10030465 [exp]	9.2	0.9581
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	9.8	0.9643
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	13.0	0.9728
AT1G14550			Peroxidase superfamily protein...		Lus10024209 [exp]	13.1	0.9689
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	14.9	0.9737
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	15.5	0.9654

Compare expression of checked genes

Lus10007235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.