Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49690 254 / 1e-82 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G57620 253 / 5e-82 MYB ATMYB36 myb domain protein 36 (.1) AT5G65790 252 / 6e-81 MYB AtMYB68 myb domain protein 68 (.1) AT4G37780 241 / 2e-77 MYB ATMYB87 myb domain protein 87 (.1) AT2G36890 223 / 1e-70 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G23000 216 / 3e-67 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT5G56110 182 / 1e-54 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT3G23250 170 / 3e-50 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT5G15310 171 / 4e-50 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 170 / 1e-49 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028248 [exp] 526 / 0 AT5G65790 253 / 2e-82 myb domain protein 68 (.1) Lus10006978 [exp] 257 / 1e-83 AT5G57620 286 / 6e-96 myb domain protein 36 (.1) Lus10011606 [exp] 258 / 3e-83 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10039646 [exp] 256 / 1e-82 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10001316 [exp] 255 / 1e-82 AT5G57620 280 / 2e-93 myb domain protein 36 (.1) Lus10013830 [exp] 236 / 3e-75 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10021428 [exp] 233 / 4e-74 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10026543 [exp] 232 / 2e-73 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10016139 [exp] 230 / 8e-73 AT5G57620 236 / 6e-76 myb domain protein 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113700 [exp] 294 / 9e-98 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 282 / 5e-93 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 261 / 2e-84 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.006G170800 [exp] 253 / 3e-81 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.006G234200 [exp] 237 / 6e-76 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.016G099200 [exp] 237 / 1e-75 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 237 / 2e-75 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 236 / 3e-75 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.006G123400 [exp] 236 / 4e-75 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.018G058800 [exp] 229 / 2e-73 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007248 pacid=23182171 polypeptide=Lus10007248 locus=Lus10007248.g ID=Lus10007248.BGIv1.0 annot-version=v1.0 ATGGGGAGGGCACCTTGTTGCGACAAGGCCAACGTGAAGAAAGGACCCTGGTCACCTGAGGAAGATGCCAAGCTCAAATCTTACATCGACCAGCACGGCA CCGGCGGCAACTGGATCGCTCTCCCACAAAAGATCGGGCTGAAGAGATGTGGGAAGAGCTGCAGATTAAGATGGCTAAACTACCTCCGACCAAACATCAA ACATGGCGGCTTCTCCGAGGAGGAAGACAACCTCATTTGCAGCCTCTATATTAGTATCGGCAGCAGGTGGTCGATAATAGCGGCGCAACTACCTGGGAGA ACAGACAACGACATAAAGAACTACTGGAATACTCGGCTTAAGAAGAAGCTCCTCGGCAAACAGCACCGCAAACTCCACCGCAAACTAACACCTACTAGTA CTTCTGGCACCAAGGGGAGATCAGAAGCTGCTGCAGCACCAGATCATGGTATTGCTAATACTAGTAATAATAATAATAGTAATGATCAGTTAATAAATGG GTTGGTAATACCAGCTAGTACTAGTACGCAAAATCAACGCTACTGGCCACCTATACCATACGCTAACGAGGAGTCGCGCCTTAATGAACAAGCGGCCATC CGGAAGCTGCTCCTCAACCTGGGAGGCCGATTCTCTTCAGAGGATATTCATAGTAGCCGCCACTCTCACTCTCATTCTTCTTCTGCTTCCATGGAGGGTA CTGAAGTAGTTCTGCAAACTATCCAAGCGGTGGATCATCATAATAGTGATCATCATCTTGAGTACTGCAATAATAACACCACCGTTGTGGATAGCTTGGA GGCTGGTGGTGGGAGTAGTAGTCTAGATGCAGGGCTAGAGTTTCTGTTGTCAAGCGGCGATCCACAAGAGATGATGATGGTGATGAGTAGTACTGATATT GCAGATCATCATCATCATGTCCCCAAGAATAATATTATTATCGATGTCGATCATCACACTACTAATTTTGTGTCGCTGGCTGAAGGACTACTGCTGCACC AAAGCAGCAGGTTAATGACTACTAGTCATCATCATAAGGAGGATGATCAGTACTATGGGTTTGATGCTGCTGGTGTTGATCAGATGATGATGATGCATCC CTACCAAGAAGGTGCCGCAAGATCCATGTAA
AA sequence Show only first row Show all	>Lus10007248 pacid=23182171 polypeptide=Lus10007248 locus=Lus10007248.g ID=Lus10007248.BGIv1.0 annot-version=v1.0 MGRAPCCDKANVKKGPWSPEEDAKLKSYIDQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNLICSLYISIGSRWSIIAAQLPGR TDNDIKNYWNTRLKKKLLGKQHRKLHRKLTPTSTSGTKGRSEAAAAPDHGIANTSNNNNSNDQLINGLVIPASTSTQNQRYWPPIPYANEESRLNEQAAI RKLLLNLGGRFSSEDIHSSRHSHSHSSSASMEGTEVVLQTIQAVDHHNSDHHLEYCNNNTTVVDSLEAGGGSSSLDAGLEFLLSSGDPQEMMMVMSSTDI ADHHHHVPKNNIIIDVDHHTTNFVSLAEGLLLHQSSRLMTTSHHHKEDDQYYGFDAAGVDQMMMMHPYQEGAARSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	0	1
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	1.0	0.9709
AT1G05030			Major facilitator superfamily ...		Lus10035315 [exp]	1.4	0.9651
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	2.0	0.9626
AT2G19460			Protein of unknown function (D...		Lus10008471 [exp]	2.2	0.9577
					Lus10025502 [exp]	3.7	0.9569
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	3.9	0.9649
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	4.5	0.9546
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	4.9	0.9457
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	5.3	0.9452
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	6.5	0.9472

Compare expression of checked genes

Lus10007248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.