Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34190 513 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 395 / 6e-135 Xanthine/uracil permease family protein (.1) AT5G62890 321 / 1e-106 Xanthine/uracil permease family protein (.1.2.3.4) AT2G26510 319 / 2e-106 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G60030 320 / 1e-105 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 303 / 8e-99 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT5G49990 295 / 7e-96 Xanthine/uracil permease family protein (.1) AT1G49960 290 / 1e-93 Xanthine/uracil permease family protein (.1) AT1G65550 288 / 3e-93 Xanthine/uracil permease family protein (.1) AT5G25420 238 / 7e-75 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029238 [exp] 601 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 402 / 1e-137 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035311 [exp] 376 / 2e-127 AT2G05760 867 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 331 / 1e-109 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 330 / 2e-109 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 325 / 2e-107 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 321 / 3e-105 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10002787 [exp] 319 / 7e-105 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10032758 [exp] 319 / 8e-105 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058800 [exp] 546 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 540 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 403 / 4e-138 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 335 / 4e-111 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.012G077400 [exp] 330 / 1e-109 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.010G095500 [exp] 329 / 3e-109 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.008G146400 [exp] 327 / 3e-108 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.015G072600 [exp] 326 / 5e-108 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.014G035800 [exp] 325 / 2e-107 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.009G086800 [exp] 284 / 2e-91 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10007289 pacid=23142486 polypeptide=Lus10007289 locus=Lus10007289.g ID=Lus10007289.BGIv1.0 annot-version=v1.0 ATGGCTGATCCCAAACCAGAAGAGATGACTCACCCACCAATGGACCAGCTTCAGGGTTTGGAGTACTGTATTGACTCAAATCCTTCTTGGGGGGAGACGA TTGCTTTGGGATTCCAGCATTACATTTTGGCTTTGGGGACTGCGGTTATGATCCCTTCTTTTCTTGTGCCTTTGATGGGTGGTGACAGTGGCGATAAAAT CAGAGTGGTACAGACTTTGCTTTTCATTGAAGGGATCAACACGCTGATTCAGACTCTGTTTGGAACTCGTCTGCCGACTGTGATTGGTGGCTCTTATGCC TTTATGGTCCCGATCATATCCATAATTCATGATCCTGCATTGACCAGGATTGAGGATGATCATTTGAGATTTCTTAGCACTATGAGAGCTGTACAAGGTG CTTTGATAGTGGCATCAAGCATTCAGATAATTCTGGGATTCAGTCAATTGTGGGCCATTTGTTCCAGGTTCTTCAGCCCACTTGGAATGGTTCCTGTAAT ATCCTTGATGGGTTTTGGCCTATTTGACAGAGGCTTCCCTGTGGTTGGACACTGTGTGGAATATGGCATTCCAATGCTCATTCTGTTCATTGTGTTCTCT CAGTACTTGAAGAGCTTCAGTTTCAGACAATTGCCAGTACTAGAGCGGTTTGCTTTGCTGATAACTGTGACAGTAATATGGGCGTATGCACATCTCTTGA CGGTCGGTGGTGCATATAGACATCGCCCAGACCTTACTCAAGTGAACTGCCGAACCGACAGGGCTTACCTCATTTCATCTGCTCCATGGATAAAGATTCC ATATCCTCTACAATGGGGTGCACCAACATTCGATGCTGGTCACTGTTTCGGGATGATGGCTGCTGTTATCGTCTCACTCATTGAGTTCAATGATTTTCTG AACACGATCTTCTTCTCATCCCCAACTGTCGCGATGATGGTAGCCGTGTTCTTGGACAACACACTTGACTACAAGGACAGTGCTAGAGACAGAGGGATGC CATGGTGGGCCAAGTTCAGATCATTCCAAGGAGACAGCAGGAATGAAGAATTCTACACTCTCCCTTTCAACCTAAATCGATTCTTCCCTCCTTCATAA
AA sequence Show only first row Show all	>Lus10007289 pacid=23142486 polypeptide=Lus10007289 locus=Lus10007289.g ID=Lus10007289.BGIv1.0 annot-version=v1.0 MADPKPEEMTHPPMDQLQGLEYCIDSNPSWGETIALGFQHYILALGTAVMIPSFLVPLMGGDSGDKIRVVQTLLFIEGINTLIQTLFGTRLPTVIGGSYA FMVPIISIIHDPALTRIEDDHLRFLSTMRAVQGALIVASSIQIILGFSQLWAICSRFFSPLGMVPVISLMGFGLFDRGFPVVGHCVEYGIPMLILFIVFS QYLKSFSFRQLPVLERFALLITVTVIWAYAHLLTVGGAYRHRPDLTQVNCRTDRAYLISSAPWIKIPYPLQWGAPTFDAGHCFGMMAAVIVSLIEFNDFL NTIFFSSPTVAMMVAVFLDNTLDYKDSARDRGMPWWAKFRSFQGDSRNEEFYTLPFNLNRFFPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34190			Xanthine/uracil permease famil...		Lus10007289 [exp]	0	1
AT2G34190			Xanthine/uracil permease famil...		Lus10029238 [exp]	4.7	0.8891
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	9.2	0.8504
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	10.0	0.8695
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	15.5	0.8221
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	16.2	0.8832
AT5G05240			Uncharacterised conserved prot...		Lus10034236 [exp]	20.8	0.8605
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	23.2	0.8779
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	34.8	0.8517
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	38.5	0.8642
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	38.9	0.8112

Compare expression of checked genes

Lus10007289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.