Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18820 943 / 0 AAA-type ATPase family protein (.1) AT5G45720 832 / 0 AAA-type ATPase family protein (.1.2) AT2G02480 285 / 5e-80 STI STICHEL, AAA-type ATPase family protein (.1) AT1G14460 283 / 1e-79 AAA-type ATPase family protein (.1) AT4G24790 262 / 9e-74 AAA-type ATPase family protein (.1.2) AT1G21690 69 / 4e-12 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 60 / 4e-09 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT5G27740 53 / 5e-07 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029265 [exp] 1789 / 0 AT4G18820 1042 / 0.0 AAA-type ATPase family protein (.1) Lus10015234 [exp] 883 / 0 AT4G18820 934 / 0.0 AAA-type ATPase family protein (.1) Lus10005422 [exp] 850 / 0 AT4G18820 909 / 0.0 AAA-type ATPase family protein (.1) Lus10042401 [exp] 276 / 8e-77 AT2G02480 1051 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10013665 [exp] 253 / 1e-70 AT4G24790 702 / 0.0 AAA-type ATPase family protein (.1.2) Lus10033035 [exp] 251 / 3e-70 AT4G24790 687 / 0.0 AAA-type ATPase family protein (.1.2) Lus10026270 [exp] 198 / 1e-51 AT2G02480 626 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Lus10028543 [exp] 62 / 1e-09 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10019391 [exp] 54 / 5e-07 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071300 [exp] 1066 / 0 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1) Potri.004G061700 [exp] 1056 / 0 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.003G044900 [exp] 292 / 3e-82 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.004G230300 [exp] 288 / 6e-81 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.015G088100 [exp] 249 / 1e-68 AT4G24790 664 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G091700 [exp] 244 / 6e-67 AT4G24790 656 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G181300 [exp] 73 / 2e-13 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 63 / 5e-10 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.019G040000 [exp] 54 / 4e-07 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.002G080100 [exp] 47 / 5e-05 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF12169 [flax] [poplar] DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10007316 pacid=23142466 polypeptide=Lus10007316 locus=Lus10007316.g ID=Lus10007316.BGIv1.0 annot-version=v1.0 ATGACCACCAGTAGGATTCTCAAGGATGCAAATGGAAATGGTGGTGATTTCAGCGACCATCTTCGTAATCACATCCATTTGACCAACTGCATTCACCTCA AGAACCATATGCATAAGCAGCAGAGTCCAATGATGCAAGTTGGTGGTGACAATAGGTCACTAATGAGGGACCTCATTGGTCTTCAGAGGTCCAGGTCTTT GAGGGATCCTTCTGTTAGCCCTCCTTCCTGGCAGCATTCGCCTTCAGTTGTCGATTTTCTGCACAGAAAGGTCGAGGGTGATCAGATTCAGGAAGGTAGA AGATCGGTTGGGACCGATCGTAGAAGTAGTAGGAGGTTGTCTGGTGCCTCGCCGCGATTTTCGAGTCATCATCATCCGACATCCAAAGTTGTGCCTAATG ATGATGTTAGTGGTAAAAATGTAGGGTTGTTTCTCGATACGATTTCGGGGAATTCGGGATCGAAAGATAGGAGAAGTAGTAGTAGGCAACAGAAGTCTAA GCATAGTGAAGAAGGTGAGCATCATATCAAGACTCTTTCTCAGCAGCTGAATGAGGTTGCTATGGATAGTGACGATGTAGCTTCCTCTAATCTCCACCGC AATGGTGGTAGCGTTCGTGCCTCCTATAGTGGCGTTCATCGGGGTAGTAAAAGACGTAAGTTTAAGGGTGGTGCCAGAAGGAGCCGGAAACAAGACCAGT CTGTTGCTTCGAATTCGGCAGCACAAAGTTCTTCAAGGCCAAGAAGGACTCACTTGACTGTGGAAGAAGAAGAGTATGGAGATCAGAATAATGTGACACG AGGTCCTCGAAACGGATGTGGGATTCCGTGGAATTGGTCGAGAATCCATGACAAGGGTAAGATCATTCTTGACAAGGCAGGAAGGAGTTTGTCATGTGGT CTTTCAGAGTCGAGGTTAAGACGAGGCTCGAACGATTTAGACGATAATGGCGATATGATGCCAATGGCGGAATCTGGTCAATCCAACTCGTCATCTCGTT CAAATGCAGAAGAAGCGCTGCCTCTACTTGTAGAGACCAGTGACAATGCTGGTTGGGTGCATGACTATTCCGGTGAGCTCGGTTTGTATGCTGATAATTT ACTCAGAAATAATGACATTGACGATTCCGACCTCGCTTCAGAAGCTAGATCCGGTGGTCAACGCGTCGACCACCGGAGAAGACATCAGAATCTGACACAG AAGTACATGCCTAGAAGCTTTAGAGACCTTGTGGGACAGAACCTTGTGTCACAAGCTATCTCCAATGCAGTCATGAGAAGGAAAGTTGGATTACTTTACG TGTTTTATGGTCCGCACGGTACCGGTAAAACATCGTGTGCACGCATTTTTGCTCGAGCTTTGAATTGCCAGCAAGGCGGTGGTCCCATGCCATGTGGGAG TTGCAACTCCTGCACCGGGAAGAACAGAAACATTCGAGAAGTCGGTCCGGTCAGTAATAATTCCAACTTCAAAACCGTTATGGCCGATCTTCTCGACCAA AAGATAATGACCGTTTCACCCTCCAAGTATAAAGTTTTCATCTTTGACGATTGTGATACATTGTCTCATGATTGCTGGAGCGCCATGTCGAAAGTTGTCG ATCGAGCTCCTAGGCGTGTAGTTTTTATCCTCGTGAGTTCGAGTCTTGACGTTATACCTCACATAGTCTTATCGAGATGCCAAAAATTCTTTTTCCCCAA GTTGAAAGATGCAGACATTATCTATACTTTACAATGGATTGCATCCAGAGAAGGTATAGAGATCGATAAGGACGCGCTGAAGCTTATCGCCTCTCGTTCG GATGGATCGCTACGAGATGCTGAGATGACTCTTGAGCAACTCAGTCTGCTTGGACAAAAGATTTCTGTGCCTCTAGTTCAGGAGCTGGTTGGGCTAATAT CTGATGAGAAATTAGTGGATCTTCTTGACCTAGCACTATCTGCAGATACTGTAAACACTGTCAAGAATCTAAGAGTCATAATGGAGACTGGCGTGGAGCC TTTAGCTCTAATGTCACAGCTTGCTACAGTTATCACTGATATATTAGCCGGTACATACGATTTCACCAGAGAAAGACATAGAAGGAAGTTCTTCCGTCGA CAACCAATGTCAAAGGAAGAAATGGAAAAACTGCGTCAAGCGCTGAAAACTCTATCCGAGGCCGAGAAACAACTTAGGATGTCGAACGACAAATTGACGT GGCTAACAGCAGCATTGCTTCAACTTGCACCTGATCAACAGTACTTACTGCCTAGTTCCTCAAATGAACCAAGTTTTAGTCATAGTCCTCTCACCGGTCG ACGAGATATGACCAGGACAGTTGGACAGCATGCTCTAGAAGATCACCCCGTGGGAACTTCTGTTGATTTCCATGCGAACAGAACGGTGAATGACACTAAT GCAGCTCCTCAAAGGTCATCCGGTCGACCTTCTAATGCATGCCAGATGACTGACACGGGGAAAATTCGGATGGGATACGAAGAAATTTGGCTCGAGGTGG TTGAGAAGATTCGGTTTAAGAGTATAAGAGACTTCTTGTACAAGGAAGGGACACTGGTCTCTGTCAGTTTTGGTGCAGCTCCTACAGCGCACTTGCTTTT CAGCTCACAGCTTACAAAATCAAAAGCAGAGAAGTTCACAACATATCTTCTAGAAGCATTCGAGTCAGCTCTTGGCTCGCCAGTCACAATCGAAATCAGA AGCGAACCAACTGCAAACAGGCCGTCTCACACGCCACTCATTCTCAGAGATCGCGATACTACTGGAATGCCAAGTAGACCTGCAGACGAGATTGTCGAAC TACCAGCTTCGCCTTCACAGCATCAAGCAATTCCACGAAAGCTAACTCAAAGCAAGAGCCTTGTGAGGAGCAAGGTGTCCTTAGCTCATGTGATACAGCA GGCTGAAGGATGTAGCACTACCAGTACTACTACACGGCCTAGCAGTGGATGGTCGAATCGCAAAGCAGTTTCAATCGCTGAGAAGCTCGAACAAGAGAAC TTGAGACTGGAGCCTAGATCAAGAAGCATGCTTTGCTGGAAATCGTCGTCGAGGGTTACGCGTAGGAAGCTGTCTCGTTTGAAGATTAGGGGAAGAAGGC CACAATCACTGCTGAAGCTGATCTCCTGTGGGAAATGTCTGTCTGCTAAACCAAAATCTCCCACTTAA
AA sequence Show only first row Show all	>Lus10007316 pacid=23142466 polypeptide=Lus10007316 locus=Lus10007316.g ID=Lus10007316.BGIv1.0 annot-version=v1.0 MTTSRILKDANGNGGDFSDHLRNHIHLTNCIHLKNHMHKQQSPMMQVGGDNRSLMRDLIGLQRSRSLRDPSVSPPSWQHSPSVVDFLHRKVEGDQIQEGR RSVGTDRRSSRRLSGASPRFSSHHHPTSKVVPNDDVSGKNVGLFLDTISGNSGSKDRRSSSRQQKSKHSEEGEHHIKTLSQQLNEVAMDSDDVASSNLHR NGGSVRASYSGVHRGSKRRKFKGGARRSRKQDQSVASNSAAQSSSRPRRTHLTVEEEEYGDQNNVTRGPRNGCGIPWNWSRIHDKGKIILDKAGRSLSCG LSESRLRRGSNDLDDNGDMMPMAESGQSNSSSRSNAEEALPLLVETSDNAGWVHDYSGELGLYADNLLRNNDIDDSDLASEARSGGQRVDHRRRHQNLTQ KYMPRSFRDLVGQNLVSQAISNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQQGGGPMPCGSCNSCTGKNRNIREVGPVSNNSNFKTVMADLLDQ KIMTVSPSKYKVFIFDDCDTLSHDCWSAMSKVVDRAPRRVVFILVSSSLDVIPHIVLSRCQKFFFPKLKDADIIYTLQWIASREGIEIDKDALKLIASRS DGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRERHRRKFFRR QPMSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSNEPSFSHSPLTGRRDMTRTVGQHALEDHPVGTSVDFHANRTVNDTN AAPQRSSGRPSNACQMTDTGKIRMGYEEIWLEVVEKIRFKSIRDFLYKEGTLVSVSFGAAPTAHLLFSSQLTKSKAEKFTTYLLEAFESALGSPVTIEIR SEPTANRPSHTPLILRDRDTTGMPSRPADEIVELPASPSQHQAIPRKLTQSKSLVRSKVSLAHVIQQAEGCSTTSTTTRPSSGWSNRKAVSIAEKLEQEN LRLEPRSRSMLCWKSSSRVTRRKLSRLKIRGRRPQSLLKLISCGKCLSAKPKSPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	0	1
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	4.5	0.8331
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	6.5	0.8239
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	6.6	0.8486
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	10.7	0.7585
AT4G12740			HhH-GPD base excision DNA repa...		Lus10001182 [exp]	12.0	0.8271
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	14.3	0.8313
AT1G04030			unknown protein		Lus10029611 [exp]	15.9	0.8376
AT1G72090			Methylthiotransferase (.1)		Lus10016926 [exp]	20.8	0.7962
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	22.0	0.8364
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	23.5	0.8075

Compare expression of checked genes

Lus10007316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.