Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 336 / 8e-114 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 335 / 3e-113 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G25810 319 / 3e-107 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 318 / 6e-107 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 309 / 1e-103 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57550 306 / 3e-102 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57530 298 / 4e-99 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 298 / 6e-99 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT2G18800 295 / 2e-97 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G25820 288 / 5e-95 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020772 [exp] 456 / 6e-161 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 454 / 3e-160 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 449 / 3e-158 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 400 / 4e-139 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010939 [exp] 400 / 6e-139 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 398 / 3e-138 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 396 / 2e-137 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031392 [exp] 395 / 6e-137 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 390 / 3e-135 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060500 [exp] 377 / 6e-130 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 372 / 6e-128 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 369 / 7e-127 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 366 / 1e-125 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 363 / 2e-124 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 352 / 4e-120 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 342 / 6e-116 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.013G005700 [exp] 333 / 4e-112 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 329 / 5e-111 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G071200 [exp] 327 / 3e-110 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10007348 pacid=23166204 polypeptide=Lus10007348 locus=Lus10007348.g ID=Lus10007348.BGIv1.0 annot-version=v1.0 ATGGCTGGTGTTCTTCCTCTAGTCACATTGGTGCTATTGGGTCATCTACTAACAATCTCAGAAGCCAACTTCAACCAACAGTTCGATATCACCTTCGGAG ATCAACGCGCCCAGATTCAAAACGGAGGCCAACAACTCACTCTCTCGCTAGACAAGTTCTCAGGTTCCGGATTCAAGTCCAAGAATGAGTACCTCTTCGG GCGGATCGATATGCAGATCAAGCTCGTCGCCGGAAACTCCGCTGGCACCGTAACCACTTTCTACTTATCGTCAGAAGGAGCAAACCACGATGAAATCGAC TTCGAATTCCTGGGAAACTCATCGGGAGATCCGTATCTTATCCATACAAATGTGTTCGCACAGGGGAAAGGAAACAGAGAACAGCAATTCTATCTCTGGT TCGACCCAACATCTGCTTTCCACACCTATTCCATCCTCTGGAATCCCCAACGAATCATATTCTTGGTGGACAACATACCGTTGAGGGTGCACAATAACCT GGAATCAAAGGGAGTGCCGTACCCAAGCAAGCAGCCGATGAAGATATACTCGAGTCTATGGAATGCGGATGACTGGGCAACTCAAGGTGGGCGGGTGAAG GCTGACTGGACCAAAGCTCCTTTCGTGGCTTCGTACAGGAACTTCAGGGCTGATGCATGCATTTGGTCCTCTGGTTCTTCTTCTTGTTCTTCTGGAAGTG GGTTTCAGAATGGAGCTTGGCAGACTCAGGGTTTGGATGCTGCCGGAAGGAATAGGCTCCGCTGGATTCCTACTAGCTTACCATCTTCGTCTGATAAAGG AAAGCATGCATCTCATTGCCATGGACCAGTTAAGATTGCTGATGTCGGTGAAACTAGAAATCTTTTCGTGGAAAGTAAAGATGGGGAAATTGTGGTAGCA AGTACACCTGCCATTAGCAATCAGAGTGTTCCTGTAGCTCAAGGTGGGAAAGATGTACATTCACCACAACATCAGCTTCCTACTCGTTTAGCATCTGAGG CTGGAAATAAGAAGCCTGCGGTAGACAAGAAGAATGAGAAACATTTAGATGCTCAAGCCACCAAAAACGTGAATGATAGAGGTGATTTTTCTGCTTCTTC TGTCGGGAATATGCCGCAAATTGAAACCCATCGGAGATTACCTGTATATCCTTTGAAGAAGTATGAAGACCTGAATTTACTTCAGAGGAGGAAGATGAGG AAATGGTCCTTTGAGGAGGAAACTGCATTGATCAATGGGGTCCAACAGTTTGGCCCTGGTGCTTGGAAATACATTCTTGACTCCAGACGCGATCAATTTG ACAACAGGTCCGCGGTTGATCTGATAGATAAGTGGAGAAACATGACAAAGTACAACCGCTGA
AA sequence Show only first row Show all	>Lus10007348 pacid=23166204 polypeptide=Lus10007348 locus=Lus10007348.g ID=Lus10007348.BGIv1.0 annot-version=v1.0 MAGVLPLVTLVLLGHLLTISEANFNQQFDITFGDQRAQIQNGGQQLTLSLDKFSGSGFKSKNEYLFGRIDMQIKLVAGNSAGTVTTFYLSSEGANHDEID FEFLGNSSGDPYLIHTNVFAQGKGNREQQFYLWFDPTSAFHTYSILWNPQRIIFLVDNIPLRVHNNLESKGVPYPSKQPMKIYSSLWNADDWATQGGRVK ADWTKAPFVASYRNFRADACIWSSGSSSCSSGSGFQNGAWQTQGLDAAGRNRLRWIPTSLPSSSDKGKHASHCHGPVKIADVGETRNLFVESKDGEIVVA STPAISNQSVPVAQGGKDVHSPQHQLPTRLASEAGNKKPAVDKKNEKHLDAQATKNVNDRGDFSASSVGNMPQIETHRRLPVYPLKKYEDLNLLQRRKMR KWSFEEETALINGVQQFGPGAWKYILDSRRDQFDNRSAVDLIDKWRNMTKYNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007348 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	1.4	0.9598
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	2.0	0.9393
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	2.4	0.9086
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	4.9	0.9267
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	6.9	0.9202
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10020526 [exp]	7.7	0.8625
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	7.7	0.8943
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	8.0	0.8814
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	8.8	0.8944
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	9.2	0.9104

Compare expression of checked genes

Lus10007348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.